Shewanella loihica: Shew_2020
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Entry
Shew_2020 CDS
T00489
Name
(GenBank) seryl-tRNA synthetase
KO
K01875
seryl-tRNA synthetase [EC:
6.1.1.11
]
Organism
slo
Shewanella loihica
Pathway
slo00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
Shew_2020
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
slo01007
]
Shew_2020
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slo03016
]
Shew_2020
Enzymes [BR:
slo01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.11 serine---tRNA ligase
Shew_2020
Amino acid related enzymes [BR:
slo01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
Shew_2020
Transfer RNA biogenesis [BR:
slo03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
Shew_2020
Prokaryotic type
Shew_2020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2b
Seryl_tRNA_N
FlgN
ERM_helical
FapA
Transcrip_act
DUF948
Mce4_CUP1
Motif
Other DBs
NCBI-ProteinID:
ABO23886
UniProt:
A3QEI8
LinkDB
All DBs
Position
complement(2332809..2334095)
Genome browser
AA seq
428 aa
AA seq
DB search
MLDPKFLRTELEATAERLATRGFILDVDRLSKLEEKRKSLQVATEELQASRNAISKSIGQ
AKAKGEDVAPIMAKVGDLGAELSSKEAELKQLLEELNAIAMSVPNLPDESAPIGADENDN
VEIRRWGEPKQFDFDVKDHVDLGEQHAGLDFKSAVKITGSRFIVMKGQIARMHRALTQFM
LDLHTTEHGYTETYVPLLVNEDSLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPL
TNLARDTIIDEDELPIKMTAHTACFRSEAGSYGRDTRGLIRQHQFDKVELVQLVKPEDSM
AALESLTQHAETVLQRLGLPYRTVVLCTGDMGFGAAKTFDIEVWLPAQNTYREISSCSNM
QDFQARRMQARYKAKSAKKPALLHTLNGSGLAVGRTLVAVLENYQNADGSITVPEALRPY
MGGLTQIG
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgttagatcccaaatttttacgtactgaattagaagcgaccgccgagcgtctcgccacc
cgtggttttatcctggatgtggatcgtctcagcaagttagaggaaaagcgtaagtcacta
caggtggcgacagaagagctgcaagcgtcccgtaatgcgatctccaagtctatcggtcag
gctaaggcaaagggcgaagatgttgcacctatcatggccaaagtcggcgatcttggcgcc
gagcttagcagtaaagaagccgagttaaagcagctgctggaagagctgaatgctatcgcc
atgagcgtgcctaacctgccggacgagtcggcgcctattggtgcggacgaaaacgacaac
gtcgagatccgccgctggggtgagcctaagcagtttgatttcgatgtgaaagatcatgtg
gatctgggtgagcaacacgctggtcttgatttcaagagtgccgttaagatcaccggttct
cgtttcatcgtgatgaaggggcagatcgcccgcatgcaccgtgcgctaactcagttcatg
ctggatctgcacaccacagagcatggttacactgaaacctatgtgccgctgctggttaac
gaagacagcctgcttggtaccggtcagctgcctaagtttggtgaagatctgttccacacc
aagcctgctaccgaagaaggtcagggcctaagcctgatcccaaccgccgaggtgccgctg
actaacctggctcgcgataccattatcgatgaagatgagctgccgattaagatgacggct
catacggcttgtttccgcagcgaagcgggctcatacggccgtgatactcgtggtcttatt
cgtcagcaccagttcgacaaggtagagttggttcagctggtgaaaccagaagactctatg
gccgcgctcgagagtctgactcaacacgctgaaaccgtgctgcaacgcctgggtctgcca
tatcgcactgtagtactttgtactggcgatatgggctttggcgcggctaagacctttgat
attgaagtctggctgcctgcacagaatacttaccgcgagatctcatcttgcagcaacatg
caagattttcaggctcgtcgcatgcaagctcgctataaagcaaagtcagccaagaagcct
gcactgctgcacacattgaatggttcaggtttagcggtcggtcgtactttggtcgccgtg
ttggaaaactatcaaaatgccgatggttcaatcacagttccagaggcgctgcgtccatat
atgggcgggctgactcaaataggctaa
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