Shewanella loihica: Shew_2064
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Entry
Shew_2064 CDS
T00489
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
slo
Shewanella loihica
Pathway
slo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Shew_2064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_2064
DNA repair and recombination proteins [BR:
slo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shew_2064
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Shew_2064
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_30
Kinesin
AAA
Ish1
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ABO23930
UniProt:
A3QEN2
LinkDB
All DBs
Position
complement(2382840..2384858)
Genome browser
AA seq
672 aa
AA seq
DB search
MSESAFDLVSQYAPAGDQPGAIKQLVDGLDAGLANQTLLGVTGSGKTFTIANVIKQMQRP
TIIMAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHI
EQMRLSATKALLERRDVVLIASVSAIYGLGDPESYMKMLLHLRQGDFMGQREILQRLSEL
QYTRNDIELDRGTFRVRGEVIDIFPAESDKQAIRVELFDDEIDRLSLFDPLTGHILQRIA
RTTVYPKTHYVTPREKILAATEDIKQELRERKQYLLDNNKLIEAQRISERVQYDIEMMTE
LGYCSGIENYSRYLSGRRPGEGPPTLLDYLPADGLLILDESHVTVPQIGAMYKGDRSRKM
NLVEYGFRLPSALDNRPLKFEEFESLMPQTIFVSATPAQYELDKSDGEIAEQVVRPTGLL
DPEIEVRPVAIQVDDLLSEANKRVAVNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSD
IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTI
GRAARNVNGKVILYADNMTKSMAKAIGETERRREKQREFNLANGITPKGVSKKIADVMDL
GDYNEHTAKVLPKYQKVAESRTTYAKQDASSLSHQIDELEKRMHQHARDLEFEQAAALRD
EVLALREALIKA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgaatcagcatttgatctcgtttcgcaatacgccccggctggcgatcagcctggg
gcaatcaagcaacttgtcgacggcctggatgccgggctggcaaaccagacattgcttggg
gtaacgggatccggcaaaacctttaccatcgccaatgttatcaagcagatgcagcgccca
actatcatcatggcgcccaacaagaccctggcggcccagctctatggcgagatgaaggag
ttctttcctaataatgccgtcgagtattttgtctcctactacgactattatcagcccgag
gcctatgtgccgtcgaccaatacctttatcgagaaggatgcctcggtcaacgctcatatc
gaacagatgcgactctctgccaccaaggcgttgcttgagcggcgcgatgtggtgctgatc
gcctctgtatcggccatttatggtttgggcgaccctgaatcctacatgaagatgttgctg
catctgcgtcagggcgattttatgggccagagggagatcctgcagcgcctgagcgagctg
caatatacccgtaacgatatcgagctggatcgcggtaccttcagggtgcgcggtgaggtg
atcgatatcttcccggccgaatctgacaagcaggcgatccgtgtcgaactgttcgacgat
gaaattgaccgtctcagcctgtttgatcccttgaccggccatattctgcagcgcatcgcg
cgcaccactgtctatcctaagacccactatgtgacgcccagagagaagatcctggcggct
acagaggatatcaagcaggagctcagagagcgcaagcagtatctgctggacaataataag
cttatcgaggcgcagcggatttctgagcgggtgcaatacgatattgagatgatgacagag
ctggggtactgctccggcatcgaaaactattcccgctatctctctggcagacgcccgggc
gaggggccgccgaccctgctggactatttgccagccgacggcctgttgatcctcgacgag
tcccacgtaacagtgccgcagatcggcgccatgtataagggtgaccgttcgcgcaagatg
aatctggtggagtatggtttccgtctgccctcggcgctggataaccgtccgctcaagttc
gaagagttcgaatccctgatgccacagaccatcttcgtgtcggcaaccccggcgcagtat
gagctggataagagtgacggggagatcgccgagcaggtggtgcggccgacaggcctgctg
gatcccgagatagaggtgcgcccggtggcaattcaggtggacgatcttctgtctgaagcc
aacaagcgcgtcgcggtgaacgagcgggtgttggtgaccacgttaaccaaacgtatggcg
gaagatctcaccgagtatctcgatgagcatggtgtcaaggttcgttatctgcactcagac
atagatacggtagagcgggtggagatcatccgcgacctacgcctgggtgtatttgatgtg
ctggtcggcatcaacttgctcagggagggcctggatatgcccgaggtctccctggtgtgc
atcttagatgccgataaggaaggcttcctgcgctcagagcgctccctcattcagaccata
ggtcgcgccgcccgaaacgtgaacggcaaggtgatcctctacgccgataatatgactaag
tcgatggccaaggcgatcggtgagactgagcgtcgcagggagaaacagcgtgagtttaac
ctggccaacggcatcacaccaaaaggggtgtcgaagaagatcgccgacgtgatggatctg
ggtgactataacgagcataccgccaaggtgttgccgaaataccagaaggtggcggagtcc
agaactacctatgccaagcaagacgcgtccagcctcagccatcagatcgatgagctggag
aagcgtatgcatcagcatgccagggatctggagttcgaacaggcggcagcgttacgtgat
gaagtgctggccctgcgcgaggcgctgattaaggcttag
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