Shewanella loihica: Shew_2187
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Entry
Shew_2187 CDS
T00489
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slo03016
]
Shew_2187
Enzymes [BR:
slo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Shew_2187
Transfer RNA biogenesis [BR:
slo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Shew_2187
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
GED
Gag_p30
Motif
Other DBs
NCBI-ProteinID:
ABO24053
UniProt:
A3QF05
LinkDB
All DBs
Position
complement(2545541..2546647)
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AA seq
368 aa
AA seq
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MTFQYVEDDASLTELVDKYRQAKVLMLDTEFVRTRTYYAKLGLIQVYDGETLALIDPVAV
SDLSAFWALLERDDMISVLHSCSEDLEVLARYGRCQPKVLFDSQIAAAFCGWGHGMGYAK
LVEHCLGVQLDKGESRTDWMKRPLSDAQLQYAANDVDYLYRLYPQLLEKLQESGRMPWLL
EEGERMTQGRLESPDGDTAYLKVKNAFQLSPKQLAYLKVLAKWRLQKALDRDLALGFVIK
DHALLALAKKQPKSTGEIFRMTELTEQEKRLHAKAIIAEMAKADLDNLPEAIDVIALKPG
YKSAFKAIKQALTQVAETHQVPMELLGSKRHIHEYLQWRWNDGQGEMPLVLQGWRGELSK
DALAEISC
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
ttgacctttcaatatgtagaggatgatgccagcctaacagagttggtggacaagtatcgt
caggctaaggtcctgatgttggatactgaattcgttcgcacccgcacctattacgccaag
ctgggactgatccaggtctatgacggcgagaccctggcgctgatcgatcctgttgcggta
agcgatctctctgcattttgggccctgctggagcgcgacgatatgataagcgtgctgcac
tcttgcagcgaagatctcgaagtcttggctcgctacggtcgctgtcagcctaaggtgctg
ttcgacagccagatcgccgccgccttctgtggttggggtcatggcatgggctacgccaag
ctggtggagcactgcctgggcgtgcagctggataagggcgagtcgcgcaccgactggatg
aaacgtccgctcagcgatgcccagctgcagtatgcggccaacgatgtggattatctctat
cggctctatcctcagctgctagaaaagctgcaagagtctggcagaatgccttggctgctc
gaagagggtgagcgcatgacccaggggcgtctggagagcccggatggggacaccgcctac
ctcaaggtgaagaacgccttccagctaagccctaagcagctggcctatctgaaggtgctg
gccaagtggcggttgcaaaaggcgctggacagagacttagccctgggcttcgtcatcaaa
gatcacgcgctgctggcgctggccaagaagcagcctaagagtacgggtgagatcttcagg
atgacagagctgaccgagcaggagaagcgcctgcatgccaaggcgatcatcgccgagatg
gccaaggcggatctggataacctgcccgaggctatcgatgtgatcgccctgaaacccggc
tataagtcggcctttaaggcgatcaaacaggcgctaacccaggtggcggaaacccatcag
gtgccgatggagctgctgggctctaagcgtcatattcatgagtaccttcaatggcgctgg
aacgatggccagggcgagatgcccttggtgttacagggctggcgcggtgagctgagtaag
gacgccttggccgagataagctgctaa
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