Shewanella loihica: Shew_2188
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Entry
Shew_2188 CDS
T00489
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
slo
Shewanella loihica
Pathway
slo00061
Fatty acid biosynthesis
slo00071
Fatty acid degradation
slo01100
Metabolic pathways
slo01212
Fatty acid metabolism
slo02024
Quorum sensing
slo04146
Peroxisome
Module
slo_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Shew_2188
00071 Fatty acid degradation
Shew_2188
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Shew_2188
09145 Cellular community - prokaryotes
02024 Quorum sensing
Shew_2188
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
slo01004
]
Shew_2188
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slo04147
]
Shew_2188
Enzymes [BR:
slo01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Shew_2188
Lipid biosynthesis proteins [BR:
slo01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Shew_2188
Exosome [BR:
slo04147
]
Exosomal proteins
Exosomal proteins of breast milk
Shew_2188
Exosomal proteins of breast cancer cells
Shew_2188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Pept_S41_N
Motif
Other DBs
NCBI-ProteinID:
ABO24054
UniProt:
A3QF06
LinkDB
All DBs
Position
complement(2546738..2548411)
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AA seq
557 aa
AA seq
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MEQLWTKNLPHDVPAIIDAKQYSSLIDLFESSVAKYADQPAFVNMGATLTYRKLEERSRA
FAAYLQNELKLQKGDRVAIMMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLNDS
GAKAIVVVSNFANTLEQVVEQTPVKSVILTGLGDLLSAPKRTLVNFVVKYIKKMVPKYHL
PHAISMRQSLSKGRRLQYVKPTIKGDDIAFLQYTGGTTGVSKGAMLTHGNIVSNLLQADA
AYSPLLADGKEFVVTALPLYHIFALTVNCLLFLHKGANNLLITNPRDIPAFVSELKKHPF
TALTGVNTLFNALVSSEEFKTLDFSNLKLSIGGGMAVQRAVADKWQGITKTRLLEGYGLT
EASPLLTCCPYNLEGYNGSIGFPVANTDMQVRDEEGNVLPQGETGELFAKGPQVMKGYWQ
RPEETAKVIDKDGYLATGDIGYMDEQGFFFIVDRKKDMILVSGFNVFPNEVEEVVALHPK
VLEVAAVGVPHEVSGELVKVFVVPKDKSLTEEQVIKHCRHHLTGYKIPKLVEFRDELPKS
NVGKILRRELRDEAKSA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggaacagctttggacgaaaaatttaccccatgatgtgcccgctattatcgatgcaaag
caatacagctcgctgatcgacctgtttgaaagctcggtagccaagtatgccgatcagccc
gcctttgtgaacatgggcgcgacgctgacctatcgaaaactcgaagagcgcagccgtgcc
tttgcggcttatctgcaaaacgaactcaagctgcagaagggcgatcgcgtggcgatcatg
atgcctaacctgctgcagtaccccatcgccctgtttggcatattgcgtgccggtatggtg
gtggtcaacgtgaaccctctgtataccccaagagagttgaagcatcagctcaacgactcg
ggtgccaaggcgatcgtcgtggtatctaactttgccaacaccctggagcaggtggtggag
cagacgccggtgaagagcgtgatcctcacaggtcttggcgacttgctcagcgcgcctaag
cgcaccctagtgaactttgtagtcaagtacatcaagaagatggtgcctaagtatcatctg
ccacatgccatctctatgcgtcagtcgctctctaagggacgccgcctgcagtatgtgaag
ccgactatcaagggggacgatatcgccttcttgcaatacaccggcggcaccacaggtgta
tctaagggcgctatgttgacccatggcaatatcgtcagcaacctgctgcaggccgacgcg
gcctattcgccgctgctcgccgatggtaaggagtttgtggttaccgcactgcccctgtat
cacatcttcgccctgacggtgaactgcctcttgttcctccataaaggcgcgaacaacctg
ctgatcactaacccaagggatatcccggcattcgtgtctgagttgaagaagcatccattc
acggcgctcaccggggtgaacaccctgtttaatgctctggttagctcagaagagtttaag
accttggatttctccaaccttaagctctctatcggtggcggtatggcggtgcagcgcgcc
gtggccgataagtggcaggggatcaccaagacgcgtctactggaaggttacggtctgacc
gaggcctcgccgctgctgacctgctgcccctataacctggagggctacaacggctctatc
ggcttcccggttgccaataccgacatgcaggtgcgtgacgaggagggcaatgtgctgcct
cagggcgagaccggcgagctgtttgccaagggccctcaggtgatgaaaggctactggcag
cgccccgaagagacggccaaggtgatcgataaggatggctacctggccaccggcgatatc
ggttacatggatgagcaaggcttcttctttatcgtggatcgcaagaaggatatgatcttg
gtttctggctttaacgtcttccccaacgaggtggaagaggtggttgccctgcatcctaag
gtgctggaagtcgccgccgtcggcgttccccatgaggtgagcggcgagctggtgaaggta
tttgtggtaccaaaagacaaatctttgaccgaagagcaggtgatcaagcactgtcgtcat
catttgacgggatataaaattcctaagctggtagaattcagggatgagctacctaagagc
aacgtgggcaagatcttacgccgcgagttgcgtgacgaagccaaatcggcctag
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