Shewanella loihica: Shew_2224
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Entry
Shew_2224 CDS
T00489
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slo03032
]
Shew_2224
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_2224
Enzymes [BR:
slo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Shew_2224
DNA replication proteins [BR:
slo03032
]
Prokaryotic type
DNA Topoisomerases
Shew_2224
DNA repair and recombination proteins [BR:
slo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Shew_2224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
ABO24090
UniProt:
A3QF42
LinkDB
All DBs
Position
complement(2594700..2597396)
Genome browser
AA seq
898 aa
AA seq
DB search
MEPIYRILRLFGADHSMGKSLVIVESPAKAKTINKYLGKDYIVKSSVGHIRDLPTSSSSD
ASSSTKSPAEVRKMSTEEKAKYKADKAKKALVARMGVDPERGWKAKYQTLPGKEKVVKEL
QSLAENADHIFLATDLDREGEAIAWHLQEVIGGDPERYQRVVFNEITKSAIQEAFSHPSQ
LNTNMVNAQQARRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVATRLVVEREGEIKAFVP
EEFWDIHAELTTLGNEGLKMQVAKFKGDNFNPVNEAQAMVAVNALKDSKYQVSSREVKAT
SSKPSAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVR
DMIGKEYGDKYLPDAPIRYGSKEGAQEAHEAIRPSDVNVSATSLSDMERDAQRLYELIWR
QFVACQMTPAKYDATRLTVTAGDYELKASGRTLKFDGWTRVQTALKKKNEEDNTLPMVAE
GDVLALEELLPKQHFTKPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVENR
RFYAEKMGEIVSESLIGSFEELMSYDFTAGMEQTLDNVAQGQLEWKKVLDNFYKGLTAQL
EKAELPPEEGGMRPNEMVLTDIACPTCGRPMGIRTGTTGVFLGCSGYALPPKERCKTTMN
LTPGEEAVSENSEDAETDALRAKHRCDVCGTAMDSYLIDEKRKLHVCGNNPICGGYEVEQ
GQFKIKGYEGPIIECDRCGNDMELKNGRFGKYFGCTNSECKNTRKLLKNGEVAPPKEDPI
HLPELKCTKSDGYFVLRDGAAGIFLAASTFPKSRETRAPLVEELVKYRELLWPKYQYLAD
APVADEDGNKAVVRFSRKTKEQYVATEIDGKATGWTAKFVGGKWVSEAKAKPKAKKKA
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggagccaatttacagaattttgagactttttggcgcagatcattctatgggtaaatcg
ctagttattgtcgaatcaccggccaaagccaagactattaacaaatatctcggcaaagat
tacatcgtaaaatcgagtgtgggtcacatccgtgatcttcctacctcatcctccagtgac
gccagttcgtcgactaaatcgcccgccgaagtgcgcaagatgtccaccgaagagaaggct
aaatataaggctgacaaagcgaagaaagccctggttgcgcgtatgggcgtcgacccagag
cgaggctggaaagccaagtatcagacgcttccgggcaaagagaaagttgtcaaagaatta
cagtcacttgctgaaaatgcagatcatatcttcctcgcaaccgatttggatagagagggg
gaggcaattgcatggcatcttcaagaagtgattggtggggatccggagcgctatcagcgt
gtggtctttaacgagatcaccaagagcgcaattcaagaggcgttcagccatccgtctcag
ctcaacaccaatatggtcaatgcccagcaggcgagacgttttctcgatcgcgtagtgggt
ttcatggtgtcacctctgctgtggaaaaaagtggcccgtggcctctctgcagggcgtgtg
caatcggtagcaacgcgtcttgtggtcgagcgcgaaggcgagatcaaggcgttcgtacct
gaagagttctgggacattcatgccgagctgactaccctaggtaacgaagggctcaagatg
caggtggctaagtttaagggggataactttaaccctgtaaacgaagcgcaggccatggtt
gcggtaaacgcactaaaagacagcaagtaccaggtttctagccgtgaagtcaaagcgact
tctagtaagccctcggcgcccttcattacctcgacgcttcagcaggcggccagtacccgt
ctcggctttggcgtgaagaagaccatgatgatggcccagcgtctctatgaggcgggtcat
atcacctatatgcgtaccgactcgaccaatctgagtcaggaagccctcgacagtgtgcgt
gacatgatcggcaaggagtatggcgataagtatctgcccgatgcgccgatccgttatggc
agcaaagagggagcacaggaagctcacgaagcgattcgtccgtccgatgtgaacgttagt
gccaccagccttagcgatatggaaagagatgcccagcgtctctatgagttgatctggcgc
cagtttgttgcctgtcagatgaccccagccaaatatgatgcgacgcgtttgaccgtgacc
gcaggggattacgaactcaaggccagtggccgtacccttaagtttgacggttggactcgg
gttcagaccgcgcttaagaagaaaaacgaggaagacaacacgctgccgatggttgccgaa
ggcgatgtgctggcattagaagagttgttacctaagcagcacttcactaaaccgcccgcg
cgttatagcgaagcatcactggtgaaagagcttgagaagcgtggcattggtcgtccatcg
acctatgcgaccatcatctcgaccattcaagaccgtggctatgtgaaggttgagaatcgt
cggttctacgccgagaagatgggtgagatcgttagcgagagcctcatcggcagcttcgaa
gagctgatgagttacgactttaccgccggcatggagcagaccctagataacgtggctcag
ggccagctcgaatggaagaaggtgctggataacttctataaaggcttgaccgctcagctt
gaaaaggccgagctaccgccagaagagggcggcatgcgccctaacgagatggtgctgacc
gatatcgcctgtcccacctgtggacgcccaatgggcattcgcaccggtactaccggcgtg
ttcctgggctgttcaggttatgccttgccaccgaaagagcgctgtaagacgaccatgaac
ctgacgccgggcgaagaggccgtcagcgagaacagcgaagatgccgaaaccgatgcactg
cgcgccaagcacagatgtgatgtttgcggcacggccatggatagctatcttatcgatgag
aagcgcaagctgcatgtgtgtggtaataaccccatctgcggcggctacgaagtcgagcaa
gggcagtttaagatcaagggttacgaagggccgattatcgaatgcgaccgctgtggcaac
gatatggagctgaagaatggccgtttcggtaagtattttggttgtaccaacagtgagtgt
aagaatacgcgtaaactgttgaaaaatggtgaagtggctccgccgaaggaagatccgatc
cacctgccagagctgaaatgcaccaagtctgatggctatttcgtgctcagagacggcgcc
gcaggcatcttcctggccgcgagcaccttccctaaatcccgtgaaacccgcgcgcctctg
gtggaagagctggtgaagtaccgtgagctcttatggcccaagtatcaatatttagccgat
gcccctgtagcggatgaagacggtaataaggcggttgtgcgctttagccgtaagaccaag
gagcagtatgtggcaaccgaaatcgatggtaaggcgaccggttggacggccaagtttgtc
ggcggtaagtgggtaagcgaagccaaggctaagccaaaggcgaagaagaaagcctaa
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