Shewanella loihica: Shew_2235
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Entry
Shew_2235 CDS
T00489
Name
(GenBank) DNA polymerase III, subunits gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
slo
Shewanella loihica
Pathway
slo03030
DNA replication
slo03430
Mismatch repair
slo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shew_2235
03430 Mismatch repair
Shew_2235
03440 Homologous recombination
Shew_2235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slo03032
]
Shew_2235
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_2235
Enzymes [BR:
slo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Shew_2235
DNA replication proteins [BR:
slo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Shew_2235
DNA repair and recombination proteins [BR:
slo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Shew_2235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNA_pol3_tau_5
DNAX_ATPase_lid
AAA
AAA_22
AAA_16
AAA_5
RuvB_N
PIF1
AAA_14
ResIII
AAA_2
TsaE
AAA_18
AAA_assoc_2
AAA_7
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ABO24101
UniProt:
A3QF53
LinkDB
All DBs
Position
complement(2611845..2615186)
Genome browser
AA seq
1113 aa
AA seq
DB search
MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK
GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF
KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL
DEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQVQTM
LGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAPS
AAQLSQYAEQIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLRAIAFVPE
APVQRWMGEAGSEILLPDTPLPELGKGEDVAPTSARPDGTVKPVKPAESVLNSQAEAEVE
DKAEVEEKAKVEASNEASVAMLSDAQASTAEQTNKLSDTDGPFEANLVAVDLVEADSTEK
DALEEDEGALDLFAEQQLILSQAQSKGHSPELSAELSTNHSPEPSPEPESSPEPSPQETS
SANKSPVSEASAESKVDASTSAATAQGGEAALSTEPKMPAESVEQTASIAEQASSSADES
GSFYDDLYFSSDDDESGDPSDYEAYLAYQQGQDSQASGDISSSAATRPVDNSAQVSSAPV
NENAPLGGLTPDTGLASEDTTPNLLEDDLLDAVLNARQSLLSDLEEDAAKEDAAKESASK
KPLVGAKKPGANQAQASSEQQAGEENKSGAEPYVPPKRPEQAALSVETAPSGEATSQSFG
ETAQNAQDNALIVEAVSNTAVTNEAGKTEHGTKAPETQHNYSAQQPNAYLNDEDRPPWVS
PEPSLQAVTAPSDEVPNLAGQVDTQSESHARADAAAQIEQGLDELSLEDQSLDDQSLDDQ
SLDDQSSEDLNSDDQGSNESGAFGNHPVQSPAAQEVSAPSAVTEPVSQTTQVAFVADEIT
GHDTDLKWYRLMSALEIGGRVRQLAVNAVCKAFSEPLPLVLKPNQKHLAAPGAISQLEDA
LSKALGGSCQVAFSVGVEPERETPLEIRQRFHRELLEQAHQGLLQDENIQWLTQVMQAEM
EPDSLSYLPELLGKRGQTIALIDKSNFVATEES
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatcaggtgttagccagaaaatggcgccctgcaacatttgagcaagttgtcggt
cagtcacatgtgctgcatgccctaaccaatgccttatcgcaaaaccgtctacatcatgcc
tatctgtttaccggtacccgaggggtaggtaagacgagtctggctaggctatttgccaag
ggactgaactgtgagcaaggggtaacggccacgccctgtggccagtgtgccagctgtgtc
gagatcgcccaggggcgatttgtcgatcttatcgaggtggatgccgcgtcgcgcaccaag
gttgacgatacccgcgagttgctggacaacgttcagtatcgccccacgcgcggccgcttc
aaggtgtatcttatcgatgaggtgcacatgctctcgcgcagcagcttcaatgcgctgttg
aagacgctggaagagcccccagagcatgttaagttcttgctggcgaccacagatccccag
cgcctgcccgtcaccgtactctcccgctgtctgcaatttaaccttaagagtctgacactt
gacgagatctgcgtgcagcttggccacatcctggctcaggagcaggtggggtatgatgat
ggcgcggtaaaactactcgccaaggcggccaacggcagtatgcgtgacgccttgagtcta
acggatcaggctatagccttcggcgcaggtcaagtcaggctcactcaggtgcagaccatg
ctgggcaccatagatgagcatcatgtgattgtcttgctcaaagccctgtgcgatggcgac
gtggatctgctcatgaaggtgactggggatgttttatccttcggcgccgatccccatgag
gtgctgcgcagcctgctggaattgctgcatcagatcaccttgacccagtttgcacccagc
gccgctcagctgtcgcaatatgccgagcagatcaaggccttcgccaaacagctaaggccc
gagcaggtacagctctattatcaactattgctaaacggtcggcaggatctgccccatgcg
cccgaccctaagtcaggcctggagatggcgctgctgcgcgccatcgctttcgtgcccgag
gcgcctgtgcaacgctggatgggcgaggccggcagcgagatcctcttgcctgacactccc
ttaccagaactgggcaagggtgaagatgttgcgccaacctctgctaggccagatggaaca
gttaagccggtgaaacctgctgagtctgtgctaaacagtcaggcggaagccgaggttgaa
gacaaggccgaggttgaagaaaaagctaaggtcgaggccagcaatgaagcaagtgtggca
atgttgtccgatgcgcaagcgtccactgctgagcagacgaacaagttaagcgatactgac
ggcccatttgaagcgaatttagttgcagtggatttagttgaagctgattcgacagaaaag
gatgcgcttgaagaggatgagggtgcactcgatctgtttgccgagcagcagctgatcttg
agccaggcccaaagcaaagggcacagccctgagcttagcgctgagcttagcactaaccat
agtcctgagcctagccctgagcctgaatctagccctgagccgagcccgcaagaaacaagc
tcggcaaataaaagtcccgtaagcgaagcatctgccgagtctaaagtggatgcgtcgacg
agtgctgcgacagcacagggcggtgaagcggctctgtcaaccgagccaaaaatgccggca
gaaagcgtcgagcaaacagcttcaatagccgagcaagccagttcgtcagcagacgagagt
ggcagtttttacgatgacctctatttcagttcagatgacgatgagtctggcgacccaagc
gactatgaagcctacctagcctatcagcagggacaggatagtcaggcatctggcgatatc
tcttcctctgcggcgacaaggcctgttgacaacagtgcccaggttagtagcgctccggta
aatgaaaatgcaccacttggcggtttgactcccgatactggattggcaagtgaagacacc
acgcccaacctgttagaagatgatctgctcgacgccgtattgaatgcgcgtcagagcctg
cttagcgatcttgaggaagatgcggctaaggaggacgcggctaaggagagcgcatcaaaa
aagcccctagtcggcgctaagaagcctggggctaaccaggctcaagcgagtagcgaacag
caggcgggcgaagagaataagtctggcgcagagccttatgtgccgcccaaacggccagag
caagcagccctgagcgtagaaacagccccgagcggagaagcaacttctcagagctttggt
gagacagcccagaacgctcaagataatgccttgatcgtcgaagctgtctcgaacacggct
gtgacgaacgaggctgggaagactgagcatgggacgaaagcgcctgagacgcagcacaat
tattctgcgcagcagcctaatgcgtacctaaatgatgaagacaggccgccttgggtgtcg
ccagagccgagcctgcaggcagttaccgcaccaagtgatgaagtgcctaatcttgctggg
caagtcgatactcaatctgagtcacacgcccgcgccgatgcagctgctcagatagaacaa
ggcttggatgaactcagcttggaggaccaaagcttggatgaccaaagcttggatgaccaa
agcttggatgaccaaagctcggaggacctcaactcggatgaccaaggctcaaatgaaagc
ggtgctttcggcaatcatcccgtccagagtcctgcagcgcaggaagtgtcggcaccttca
gccgtcactgagcccgtcagccagacgacacaagtggcctttgtggccgatgagatcaca
gggcacgatacggatcttaaatggtatcgcttgatgtcggcgctggagatcggcggccgg
gtaagacagctggcggtcaacgccgtatgtaaggcctttagtgagcctctgcctttggtg
cttaagcccaatcagaagcacctggcggcgccaggcgccatcagtcagctcgaagatgcc
ttgtctaaggcgttaggcggcagctgccaggtggcgtttagcgtcggggtcgagcctgag
cgtgagacaccgctagagatccgtcagcgattccatcgcgaactgctcgagcaggcgcat
caggggttattgcaagatgaaaacattcaatggctgacacaggtgatgcaggcagagatg
gagccagacagcttaagttatctgccggagctgctgggtaagcggggccagacgatagca
cttatcgataagtcgaactttgtggcgacagaggagtcttaa
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