Shewanella loihica: Shew_2456
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Entry
Shew_2456 CDS
T00489
Name
(GenBank) SMC domain protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_2456
DNA repair and recombination proteins [BR:
slo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Shew_2456
Archaeal homologous recombinant proteins
Shew_2456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_27
AAA_29
GTP_EFTU
AAA_21
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ABO24322
UniProt:
A3QFS4
LinkDB
All DBs
Position
complement(2886466..2889522)
Genome browser
AA seq
1018 aa
AA seq
DB search
MRPLRLTMTAFGPFADEQIIDFAALGSNPLFLINGPTGAGKTTILDAICFALYGKTTGDE
REGTQMRCDMADEQRLTQVSFEFELGSTRYLIRRVPEQPRAKKSGEGVTLQKSEAQLSRV
DTDGSETLLVAAKVSDATAQIEQLTGLDVDQFRQVMVLPQGKFRELLMADSKAREKIFSQ
LFQTHIYRRIEERLKQQAAGIRRDVEAMRNRRGGILEGAELASDQALIEEQALIAPELEL
AQAHKQQAEQALLTANQNLDKGLKLQSDFNRLQALQSEGEGLKARQLEATLWQQRLQAAG
RANSLSPLYRAMQSRLGEQRSASQHLDECQQIHASAEQALNQSQQAFEQLGALEQEQLSQ
QQRLTQLEALAPQLEQLNQLSERLADGQAKMQAAEASGKQSAKQLDELNQARQEIVSRRE
ILKRDAEPQLALQQSLSDGRAQLKVFERWQQQGLEIAALEQKLTAAKTAGSELAEKHKQA
IDAHKRLELSWHRGQAARLAAELSPGEPCPVCGSLEHPEPAMGEFDLPSDEALAQAKQRE
SDALNLLHQARSEYKLLQQSLSNLQLSASLLQEELGEAAGLSFDEHQARLAELSDGFERA
KAAQQSLAQLETQLERSEHQGRELQTALDEARAHYGKLAEQLASDKGQYQQISAAIPQGF
SDVATLSTAIADLTKTIDELKARQQSVRAAHAKAEQDNAAAKASLEAASRRLGEVNALAE
QESLSFQQALATSEFESVAAFEQACLTEAEQAELSNQIKAFEQALITHQANLSQLQEALA
GCEAPDMSALEQQKMDAEQVMQQALAQWQKVSARAAQLSQTQEQLKALDLKAGALEQQYA
VVGTLADVANGNTGNKISLQRFVLSVLLDDVLLEASHRLQLMSKGRYRLLRKEERAKGNK
ASGLELEVEDAYTAKVRSVATLSGGESFMAALSMALGLSDVVQAYAGGIKLDTLFIDEGF
GSLDQDSLELAIRTLMDLQSAGRMVGVISHVTEMKEQIASRIDILKSAEGSEIKLVLP
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgagaccactgcgactgaccatgaccgccttcggccccttcgccgacgagcaaattata
gattttgccgccctgggcagtaacccgctgtttctgatcaacggccccacgggggcgggt
aagacgacgattctcgatgccatctgtttcgccctctatggcaagaccacgggggatgag
cgcgaaggcacccagatgcgctgcgacatggccgatgagcagaggctgactcaggtcagc
ttcgagtttgagctcggcagcacgcgttatcttattcgccgcgtgcccgagcagccaagg
gccaagaagagtggtgagggggtgacgctgcaaaagagcgaggcccagctgtctcgcgtc
gacacagatggcagcgagacattgctggtggcggccaaggtgtctgatgccaccgcgcag
atagagcagctgaccggcctggatgtggatcagttccgccaggtgatggtgctgccccag
ggcaagtttcgcgagctcttgatggccgactccaaggccagggagaagatattcagccag
ctgtttcagacccatatctatcgccgcatcgaggagcgcctcaagcagcaggcagccggg
atccgccgcgacgttgaggcgatgcgtaatcgccgtggtggtattctggaaggcgccgag
ttagcaagcgatcaggcactaatcgaggagcaggcgctcatcgctcccgagctggaactt
gcccaagcgcacaagcagcaagccgagcaggcactgctgacggctaaccagaatctagac
aagggcctcaagctgcagagtgatttcaatcgcctgcaggcgctgcaaagcgagggcgag
gggctaaaggctcgccagcttgaggcgactttgtggcaacagagactgcaggcggccggt
cgagccaatagcctgagcccgctttaccgggcgatgcagtcgcgtctcggcgagcagcgc
tcggcaagccagcatttagatgagtgtcagcagattcatgctagcgccgagcaggcattg
aatcagagccagcaggccttcgagcagctgggcgcgcttgagcaagagcagctgagccag
cagcagcgcctgacccagctcgaggccttggcgcctcagctagagcagctcaatcaattg
agtgagcgactcgccgatggccaagccaagatgcaggcggccgaggcgagtggtaagcag
agcgccaaacagttagacgagcttaatcaggcccgccaggagatagtgagtcgccgcgag
atcctaaaacgtgacgccgagccgcagctcgcgttgcaacaatctctgagcgacggccgc
gcccagctcaaagtgtttgagcgttggcagcagcaagggctggagatcgcggccctcgag
caaaagttaacggcggctaagacagcaggcagtgagcttgccgaaaagcacaagcaggca
atcgatgcccataagcgtctggagcttagctggcatcgcggtcaggccgcgcgcctggcg
gcagagttatcaccgggcgagccttgtcccgtctgtggcagcctggaacatccagagcct
gccatgggcgaatttgatctgccgagcgacgaggcgctggcccaggctaagcagcgagag
agcgacgcgctcaatttgctgcatcaggccagaagcgagtataagctgctccagcaatcc
ctgtcgaacctgcaactaagtgcatctctgctacaggaggagcttggcgaggcggcaggc
ttgtcgtttgatgagcatcaggcgcgacttgcagagctcagcgacgggttcgagcgggcc
aaggcggcgcagcaatcacttgcccagttagagactcagctcgagcgcagcgagcaccag
ggacgagaactacaaaccgcgctggatgaagcgcgtgcccactacggcaaactggccgag
cagctggccagcgacaaggggcagtatcagcagataagtgcggccattccacagggcttt
agcgacgttgcaacgctcagcacggccattgccgatcttaccaagactatcgatgagctt
aaggcgcgccagcaatcggtgagggcggcccatgccaaggcggagcaggataatgcggcg
gccaaggcctcgctggaggcggccagccgtcgtcttggtgaggtgaatgcccttgcggag
caggagagcctgagtttccaacaggcgctagcgacttcggaatttgaaagcgttgccgcc
ttcgagcaggcctgcctgaccgaggccgagcaggccgagttgtccaatcagattaaggcg
ttcgagcaggcgcttatcactcatcaggccaacctgtctcagctccaagaggccttagcc
ggttgtgaggcgccggatatgagtgcgctcgagcagcaaaaaatggacgccgagcaggtg
atgcagcaggccttagctcagtggcagaaggtgagcgccagggcggctcagctaagtcaa
acccaggagcagctcaaggcgctggatcttaaggccggcgctctcgagcagcaatacgcc
gtggtcggcaccctggccgatgtggccaatggcaacacgggtaacaagataagcctgcaa
cgcttcgtgctgagcgtattgctcgatgatgtcttgctggaagccagccacaggttgcag
ctgatgagtaaggggcgctatcgcttgctgcgcaaggaggagcgggccaagggtaacaag
gcctctggccttgagctggaggtggaagatgcttacaccgccaaggtgcgctctgtggcg
accctgagtggcggcgagagctttatggcggccctgtctatggcccttgggctgtcggat
gtggtgcaggcctatgccggcggcattaagctcgataccctgtttatcgatgagggcttc
ggcagcctggatcaggactccctcgagctggccatcagaaccctgatggatcttcagtct
gcgggtcgcatggtgggggtgatctcccatgtgaccgagatgaaggagcagatcgctagc
cgcatcgatatccttaagagtgccgagggtagcgagattaaattagttttaccttaa
DBGET
integrated database retrieval system
