Shewanella loihica: Shew_2610
Help
Entry
Shew_2610 CDS
T00489
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain acyl-CoA synthetase [EC:
6.2.1.3
]
Organism
slo
Shewanella loihica
Pathway
slo00061
Fatty acid biosynthesis
slo00071
Fatty acid degradation
slo01100
Metabolic pathways
slo01212
Fatty acid metabolism
slo02024
Quorum sensing
Module
slo_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Shew_2610
00071 Fatty acid degradation
Shew_2610
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Shew_2610
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
slo01004
]
Shew_2610
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slo04147
]
Shew_2610
Enzymes [BR:
slo01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Shew_2610
Lipid biosynthesis proteins [BR:
slo01004
]
Acyl-CoA synthetase
Long/very long chain acyl-CoA synthetase
Shew_2610
Exosome [BR:
slo04147
]
Exosomal proteins
Exosomal proteins of breast milk
Shew_2610
Exosomal proteins of breast cancer cells
Shew_2610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
DUF5000
Motif
Other DBs
NCBI-ProteinID:
ABO24476
UniProt:
A3QG78
LinkDB
All DBs
Position
complement(3076416..3078383)
Genome browser
AA seq
655 aa
AA seq
DB search
MTQVNNASTARAFDMGSLDTFPKILRHNAANWGKEIAMREKEFGIWTEFSWQDYHNRVKW
MALAFDHLGIKSHSTIALLGENRPEWVWGEVAAHALACFSLGIYQDSLHEEVAYLLNRSE
AQVIVAEDEEQCDKLLELGDSIPSVKYIVYCDPRGMRKYDDPRLISVEEIYRLGQEVDNT
QPRHYDNLVDAGKAENIAIYCTTSGTTSKPKIVLLQGSKFIDHCCSYLRADPRAPGDNYV
SVLPLPWIMEQVYAVGQALIARQIVNFVEEQETMMADLREIGPSFVLLAPRVWEGILADV
KARMMDSTPLKQKLFDFAMKRAEQRLAEGRRSKLADIILMKALRDRLGFSFLKSAATGGA
AMGPDTFKFFQAIGVPLRQLYGQTEMCGAYTIHDEHDVDYDTVGVAFDTAELKVINTDSE
GVGEVIARTVGMFNGYLGDQTAYDEDVKDGWMHTGDAGYFKPSGHLVVIDRIKDLAKTSQ
GIQYSPQYIENKLKFSSFIGEAVILGKDKPYLSAILCIRFSIVSKWAEQQGLAFTNYTNL
SSLPEVYQQLQAEVERVNETLPDAQKINKFILLYKELDADDGELTRTRKVRRGVIADKYG
EIIEAIYGDQSHVDIDTVITFQDGTKSRIQTQVKVATVIAPRQSIEGEASQRRAS
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgactcaggtaaataatgcgtcgacggcgcgggccttcgacatgggttcactcgatacc
tttcccaagatcctgcgccataatgcggccaactggggtaaagagattgccatgcgcgag
aaggagttcggcatctggaccgaatttagctggcaagattatcacaaccgggtgaagtgg
atggcgctggccttcgaccacctgggcatcaaatcgcacagcaccatagccttgctgggc
gagaaccgtcccgagtgggtctggggcgaagtggcggcccatgcgctggcttgcttttcc
ttggggatttatcaagactcgctgcacgaagaggtggcctacctgcttaaccgcagcgag
gcccaggtgatcgtcgccgaagatgaggagcagtgcgacaagctgctggagctgggcgac
agcatcccctcggtgaaatatatcgtctactgtgaccctcgcggcatgcgcaagtacgac
gacccacgtcttatcagcgtcgaagagatctatcgtctcggccaagaggtggataacacc
cagccgcgccactacgacaacctggtggatgcgggcaaggccgagaacatcgccatctac
tgcaccacctcgggcaccacctctaaacctaagattgtcttgctgcagggcagtaagttt
atcgaccattgctgctcttatctgcgggccgatccccgcgcgccgggagacaactatgtc
tccgtgctgccgctgccctggatcatggagcaggtctacgccgtgggccaggcgctcatt
gcccgtcagatcgtcaacttcgtcgaagagcaggaaaccatgatggcggatctgcgcgag
ataggcccaagcttcgtcttgctggccccaagggtgtgggaagggatcctcgccgatgtg
aaggcgcgcatgatggactcgaccccgctcaagcagaagttgttcgattttgctatgaag
cgcgccgagcagcgacttgccgagggcagacgctctaagctggccgacatcatcttgatg
aaggcgctgcgcgaccgtctagggttttccttcctcaagtcggcggctaccggcggcgcg
gccatggggccggataccttcaagttcttccaggcgatcggcgtgccgctgcgtcagctc
tatggccagaccgagatgtgcggcgcctacaccatacacgacgaacatgacgtggattac
gacaccgtgggcgtggccttcgataccgccgagcttaaggtgatcaacaccgacagcgaa
ggggtgggcgaggtgatcgccagaaccgtgggcatgttcaacggctatctgggcgatcag
acggcctatgatgaagatgtcaaagatggctggatgcacacgggggatgccggttatttc
aagccctcgggccacctggtggtgatcgaccgcatcaaagatctggccaagaccagccag
ggcattcagtactcgccgcaatatatcgagaacaagcttaagttctcctccttcatcggt
gaggcggtgatcttaggtaaggacaagccctatctgtcggccatcctctgtatccgtttc
agcatcgtctccaagtgggccgagcagcagggactggccttcaccaactacaccaacctg
tcgagtctgccagaggtgtatcagcagctacaggccgaggtggagcgggtgaacgagacc
ctgcccgatgcgcagaagatcaacaagtttatcttgctttacaaggagctggacgccgat
gacggcgagctgacccgtacccgtaaggtgagacgcggggtgatagccgacaagtatggc
gagatcatcgaggccatctatggcgaccagtcccatgtggatatcgacacagtgatcacc
ttccaggatgggactaagtcgcgcatccaaacccaagtcaaggtggcgaccgtgatcgcc
ccgcgtcagtccattgagggcgaggcgagtcaaaggagagcatcatga
DBGET
integrated database retrieval system
