Shewanella loihica: Shew_2627
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Entry
Shew_2627 CDS
T00489
Name
(GenBank) surface antigen (D15)
KO
K07277
outer membrane protein insertion porin family
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
slo03029
]
Shew_2627
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
slo02000
]
Shew_2627
Mitochondrial biogenesis [BR:
slo03029
]
Mitochondrial protein import machinery
Outer membrane
TOB/SAM complex
Shew_2627
Transporters [BR:
slo02000
]
Other transporters
Pores ion channels [TC:
1
]
Shew_2627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Omp85
POTRA
POTRA_1
Motif
Other DBs
NCBI-ProteinID:
ABO24493
UniProt:
A3QG95
LinkDB
All DBs
Position
complement(3100342..3102825)
Genome browser
AA seq
827 aa
AA seq
DB search
MRLNKIFASMLLVGASLSGKGWADTFQPFEVTDIQVKGLQRVALGAALLNIPIKVGDTVD
EMRLQQAIKSLYSSTNFEHIEVSRDGSVLVVTVKERPTISVVTFEGNKDIKDEQLQESLD
GSGVKAGESLDRTMLSGIEKSLQDFYYGVGKYGAKVEAQVINLPRNRVELKFKFTEGLAA
EIRQINVVGNTVFSDAELIGMLELKDYVAWWDLFGERRYQKQKLQADLETIKTFYHNRGY
IRFEVTSTQVAMTPDRKGLYITINVDEGEQYKVKEVNLTGDLMGREEVMQAILPIKVGDT
YNGADVTFTEEMYGKYLGRFGYAYPEVKTYPEIDDETKEVALNVNIKPGKRVYVRSINFT
GNQVTKDEVMRRELRQMEGAWLNSAQVEQSKARLNRLGYFETVDTQTVQVPGTDDLVDVD
FTVKEQPSGSFNAGVGYGTESGLSLQFGVQQSNFLGTGNQAGINLNTNKYSKNVNINYTD
PYFTKDGVSLGGSIYWNEFDAQEANLERYKNSSYGIAVNSGFPINEYNRINGGIGYRHNS
ISEISAYEQALRFYNIYRDANDPNADLSFDNFELTLGWYRSTLNRGTFPTDGSSQRLSGK
MTVPGSDLQYFKTDFDTSFYWPINRSHSFVLLTKARLGYGNGYGQYNDNDQILPFWENYY
SGGSSSLRGFKSNSVGPRSFYLYRGSEPCSPDPAGDTCTLPGDPNRVTVSGGRSIGGNAI
ATASVEMIVPTPFLDEAYTNSVRTSFFVDAGNVWDTEFDYDAYRFLPAEQFDKLSDYSDP
GRIRASAGMSVQWLSPMGPMVFSLAWPIKKYEDDDTEIFSFNIGKTF
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgagattgaataaaatttttgcctcgatgttattagtcggtgcgtctttatcagggaag
ggttgggccgatacattccagccttttgaagtgaccgacatccaggttaagggactgcag
cgtgttgcactgggtgcggcgctgttgaatattcctatcaaggtgggagacacggtcgac
gagatgcgtctgcagcaggcgattaagagcctgtattcctcgactaacttcgagcatatc
gaggtgagccgcgatggcagcgtcttggtagtaacggtcaaagaaaggcctaccatcagc
gtcgtgacctttgaaggcaacaaggacattaaagacgagcagctgcaagagagtctcgac
ggcagtggcgtcaaggccggtgagtcgctggatcgcaccatgctcagcggcatcgagaag
agcctgcaggacttctactatggcgtgggtaaatatggcgccaaggttgaggctcaggtg
attaacctgccgcgtaaccgtgtcgagttgaaatttaagtttaccgaaggtttggcggca
gagattcgtcagatcaacgtggtgggcaacactgtctttagcgacgccgaactgatcggc
atgctggagctgaaagactatgtggcatggtgggatctcttcggtgagcgccgctatcag
aagcagaagctgcaggccgaccttgaaaccatcaagaccttctaccacaaccgcggttat
atccgtttcgaggtgacctcgactcaggtggcgatgacccctgaccgtaagggtctctac
atcaccatcaacgttgacgagggtgagcagtacaaggttaaagaagttaacctgactggc
gacctcatgggccgcgaagaggtgatgcaggcgattctgccgatcaaggtaggcgatacc
tataacggcgcggatgtgacctttaccgaagagatgtatggcaagtatctgggccgtttc
ggatatgcctacccagaggtgaagacctatcctgagatcgatgatgagactaaagaggtc
gccctcaacgtcaacatcaagccgggtaagcgcgtctatgtacgtagcattaactttacc
ggtaaccaggttaccaaagatgaggtgatgcgccgcgagctgcgtcagatggaaggcgct
tggctgaactcggcccaggttgagcaatccaaggcgcgtctgaaccgcctgggttacttc
gaaaccgtcgatactcagacggttcaggtgccgggcacagatgacctggtggacgtcgac
ttcaccgtgaaggagcagccatcaggctcgttcaacgcgggggtgggttatggtaccgag
tcgggcctgagcctacagttcggtgtgcagcagagtaacttcctgggtacaggtaatcag
gcgggtatcaaccttaacaccaacaaatactcgaagaacgtcaacatcaactacacagat
ccttacttcaccaaagatggcgtgagcctgggtggtagcatctactggaacgagtttgac
gctcaggaagcgaacctcgaacgctataagaacagttcttacggtattgctgtcaactcc
ggcttcccgatcaacgaatacaaccgtatcaacggtggtatcggctatcgtcacaacagc
atctcggagatctcggcctacgagcaggccctgcgcttctacaacatctatcgtgatgcc
aacgatcctaacgccgacctgtcgttcgataacttcgagctgaccctcggctggtaccgc
agcacgcttaaccgcggcaccttcccaaccgatggttcgtcacagcgtctgagcggcaag
atgacggtgccaggttcggatctgcagtactttaagacagatttcgataccagcttctac
tggccaatcaaccgcagccacagcttcgtgctcctgactaaggcgcgcctgggttatggt
aacggttatggtcagtacaacgacaacgaccagatcctacctttctgggagaactactac
tcgggtggtagcagctcactgcgtggcttcaagtctaattctgtgggtccacgttcattc
tacctgtatcgtggtagtgagccgtgctcgccagatccagcaggggatacttgtaccttg
ccaggggatcctaaccgtgtcactgtgagcggtggccgctctatcggtggtaacgccatc
gctacggcgagtgttgagatgatagtgccaactccattcctggatgaggcctacactaac
tcggtgcgtaccagcttcttcgtcgatgcgggtaacgtctgggataccgagttcgactat
gacgcctatcgcttcctgccggctgagcagttcgacaagttgtctgactattcagaccca
ggacgtatccgcgcctcggcggggatgagcgtacaatggttgtcgccaatgggacctatg
gtatttagtcttgcatggccaatcaaaaaatatgaagatgatgacacagagatcttctcg
ttcaacattggtaaaactttctaa
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