Shewanella loihica: Shew_2777
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Entry
Shew_2777 CDS
T00489
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
slo
Shewanella loihica
Pathway
slo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shew_2777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slo03019
]
Shew_2777
Enzymes [BR:
slo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Shew_2777
Messenger RNA biogenesis [BR:
slo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shew_2777
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABO24643
UniProt:
A3QGP5
LinkDB
All DBs
Position
complement(3283298..3284653)
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AA seq
451 aa
AA seq
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MNFDALPLDPLLAQAAKACGYETLTQVQAKVIPTALAGRDLMACAQTGTGKTAAFSFVLL
QRLLNQPRAIGQLSALILTPTRELAIQVADSISRYSQFTELTTLAVYGGANINPQRKALA
RGVDILVATPGRLFDLLGQHDLSLETVDQLIVDEADRMLDMGFVRDIERTKRLLCVSHST
MLFSATFTPEVKALATKMLDNPEWINVTSASSGPQIEQKIYPLDARRKAELLAELIGRNN
WQQVLVFVNTKESAERLHRELKLDGIKNAVFHGDKTQGARNRALEQFKAGELRVLVATDV
AARGLDITALPLVINLELPDEPQDYVHRIGRTGRAGLSGVSISFVAKQDETALGAIEALI
GKTLPREVQPGYEMGAPLPARYRELDTRVTSKAAQPKRGKGQKFGSQDGRRGQSRAKAPQ
RKAPQRKTSSDKASNDKARRPSSDKGFRGKR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgatgccctcccgttagaccccttactggcccaggcggctaaggcctgcggc
tacgagaccctgacccaggttcaggccaaggtgatccccacggcgctggccgggcgggat
ctgatggcctgcgcccagaccggaaccggtaagacggcggcctttagctttgtgttgttg
cagcgcctgctcaatcagccaagagcaattgggcagctcagcgccctgatcctgactcca
acgagagagctggcgatccaggtggcagacagcatcagtcgctacagccagttcaccgag
ctgaccactctggccgtctatggcggcgccaacatcaatccccaacgcaaggccttggcg
agaggtgtcgatatcctggtggccacgccggggaggctattcgatctcttgggccaacat
gatttgagcctggagacggtagatcagctcattgtcgatgaggcggatcgcatgctcgac
atggggttcgtgagagatattgagcgcaccaagcggctcttgtgcgtgtctcactcgacc
atgttgttctcggccaccttcaccccagaggtgaaggcattggccactaagatgctggat
aaccctgagtggatcaatgtgaccagcgctagtagcgggccgcagatcgagcagaagatc
tatcccttagatgcaaggcgtaaggcggagctgctggccgagcttatcggccgcaacaac
tggcaacaggtgctggtgttcgtcaacaccaaggagagcgccgagcgcctgcaccgcgag
ttaaagctcgatggcatcaagaatgcggtgtttcacggggataagacccagggcgcgcgc
aaccgggcgctggagcagtttaaggccggcgagctgcgggtgctggtggcaacagatgtg
gccgcccgcggcctggatatcacagcgctgcccttagtgatcaacctagaattgcccgat
gagcctcaggactatgtgcaccgtatcggtcgtaccggccgcgccggtcttagcggggtt
agcatctccttcgtcgccaagcaggatgaaaccgcacttggcgcgatcgaggctcttatc
ggcaagaccttgccacgtgaggtacagcccggatatgagatgggggcgccgctaccggcc
aggtatcgcgagctcgacaccagagtgacctctaaggcggcccagcctaagcggggcaag
ggacagaagttcggcagccaggacggcagaaggggacagagtcgcgctaaggctccccag
cgaaaggcgccccagcgcaagactagtagcgacaaggctagtaatgacaaggcgagacgc
ccatcaagtgataagggcttcaggggcaagcgctag
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