Shewanella loihica: Shew_2822
Help
Entry
Shew_2822 CDS
T00489
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
slo
Shewanella loihica
Pathway
slo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shew_2822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slo03019
]
Shew_2822
03016 Transfer RNA biogenesis [BR:
slo03016
]
Shew_2822
Enzymes [BR:
slo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Shew_2822
Messenger RNA biogenesis [BR:
slo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Shew_2822
Transfer RNA biogenesis [BR:
slo03016
]
Prokaryotic type
tRNA degradation factors
Shew_2822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
S1_2
KH-I_KHDC4-BBP
KH_KhpA-B
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ABO24688
UniProt:
A3QGU0
LinkDB
All DBs
Position
complement(3343826..3345928)
Genome browser
AA seq
700 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PEISPEVISMIGTSAALSISGIPFNGPLGSARVGYVDGEYILNPTVSQLENSQLELSVAG
TENAVLMVESEADALPEEVMLGAVVYGHEQQQVVIQAIKELKAEVNKPMWDWTAPVQNEE
LVAKVKDLAEAGLTEAYQIVVKQDRYAQVDVVKTAAKEALLAENPDADAREIDGLLGSLE
KKVVRSRIIAGNPRIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGEQTSRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGIHAVMPTAEEF
PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAI
SGHRAEISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASAN
GDATKEAIRRIQEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN
VSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAQPKEEAASE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaatcgtaaagagttttgaatatggtcagcacacagtcacgctagagactggg
gttattgcacgtcaagcagacgcagctgttttggcaagtatgggcgatacaacagtattg
gttactgttgttggcaagaaagctgaagagccaggtcgtgactttttcccgttaaccgtt
aattaccaggaaaaaacttacgctgcgggtaaaatccctggtggattcttcaagcgtgaa
ggtcgtccatctgaaggcgagaccctcactgcacgtctgattgaccgtcctattcgtcct
ctattccctaatggttttaagaacgaagttcaggtgatcatcactgtggtttctgttgat
ccagaaatcagcccagaagtgatctctatgatcggtacttctgcggcactgtctatctca
ggcattccattcaacggtccactgggttctgctcgtgtgggttatgtcgatggcgagtac
atcctcaacccaacggtttcacagctagaaaacagccagctggaactgtctgttgccggt
actgaaaatgcagtacttatggttgagtctgaagccgatgcgctgccagaagaagtgatg
cttggcgccgtggtttacggtcatgagcaacagcaagttgttatccaggcgatcaaagag
ctaaaggccgaagttaacaagccaatgtgggactggacagctccagtacaaaatgaagag
ctggttgctaaggttaaagatttggccgaagcgggtctaaccgaagcgtaccagattgtg
gttaagcaagatcgttatgctcaggttgatgtcgttaaaacggcggctaaagaagcattg
ctggctgaaaacccagatgccgatgcacgcgaaattgacggcctgcttggcagcctagag
aagaaagtggttcgtagccgcatcatcgcgggcaacccacgtatcgacggtcgtgagcct
gacatggttcgtgctctgagcgtgatggcgggcgtactgccacgtactcacggtagtgct
ctgttcactcgtggtgaaactcaggcactggtgacttgtaccttaggtactgagcgtgac
gcacagaagatcgacagcatcatgggcgagcaaaccagtcgcttcatgttgcactacaac
ttccctccatactcagtgggtgaaaccggtatggttggctcgcctaagcgtcgtgaaatc
ggtcacggtaagctggcatggcgtggtatccacgcggtaatgccaacggctgaagagttc
ccatacagcatccgcgtagtatctgagatcaccgaatctaacggttcaagctcaatggcg
tctgtgtgtggtacttcactggcgctgatggatgccggtgtgccaatcaagacttcagtt
gctggtatcgccatgggtctggttaaagaaggcgacgatttcgttgtactttctgacatt
ctgggcgacgaagaccacttgggtgacatggacttcaaagtggctggtacccgtgacggt
gttaccgcgctgcagatggatatcaagatcgaaggtatcaccaaagagatcatgcagatc
gctctgcaacaagcctacggtgctcgcgtacacatcctgaatgtgatggaccaggctatc
tctggccaccgcgccgagatctcagatcacgcgccgcgtatcaccacactgaagatcaac
cctgagaagatccgtgacgtgatcggtaaaggcggtgcgactatccgtgcgctgaccgaa
gagactggcaccactatcgagctggaagatgacggtaccgttaagatcgcttctgccaac
ggcgatgcgaccaaagaagctatccgtcgtatccaggagatcactgccgaagttgaagtg
ggcactgtctacaacggtaaggttgttcgtatcgttgacttcggtgccttcgtgactatc
ctgccgggtaaagacggtctggtacacatctcgcaaatcgccgaggagcgtgttgccaac
gtttctgactacctggaagtgggtcaggaagtgaaggttaaggtgatggaagtcgatcgc
caaggccgcgtacgtctgtcgatgaaagaagctcagccgaaagaagaagcggcaagcgaa
taa
DBGET
integrated database retrieval system
