Shewanella loihica: Shew_3073
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Entry
Shew_3073 CDS
T00489
Name
(GenBank) Uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
slo
Shewanella loihica
Pathway
slo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Shew_3073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_3073
Enzymes [BR:
slo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Shew_3073
DNA repair and recombination proteins [BR:
slo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Shew_3073
Prokaryotic type
Shew_3073
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
ABO24939
UniProt:
A3QHJ1
LinkDB
All DBs
Position
complement(3648126..3648794)
Genome browser
AA seq
222 aa
AA seq
DB search
MTEISQWQDFIDQEAKQAYFGQLQAFVQGERDAGKAIYPEKDQVFSAFELTPLDKVRVVL
IGQDPYHGEGQAHGLCFSVQPGVKVPPSLVNMYKELASDIDGFEIPDHGYLAKWAEQGVL
MLNTVLTVEQGKAHSHAKAGWETFTDNALRQLNEQERPIIFVLWGGHAMKKSKLIQAEQH
HLVSGPHPSPLSAYRGFFGCKHFSKINELLKASGEAPIDWQV
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgacagagatcagccaatggcaagattttattgaccaggaggccaagcaagcctatttt
ggccagttgcaggctttcgtgcaaggtgagcgcgatgccggtaaggcgatctatccggaa
aaggatcaggtgtttagcgccttcgagctaacgccgctggataaggttagggtggtgttg
attggtcaagacccttatcacggcgagggccaggcgcacggcctctgcttctcggtgcag
cccggggtgaaggtgccgccatctttggtgaacatgtataaggagctggccagtgatatc
gatggctttgagatcccagatcatggctatctggcgaagtgggcagagcagggcgtcttg
atgctcaatactgtactcacggtagagcagggtaaggcgcactcccatgccaaggcgggg
tgggagacctttaccgacaacgccttgaggcagcttaatgagcaggagcgcccgattatt
ttcgtgctgtggggcggccacgccatgaagaagagcaagcttatccaggcggagcagcac
catctggtgagcgggcctcacccttcaccgctctctgcctaccgaggtttctttggctgt
aaacacttctcaaaaatcaacgagttgttaaaggcctctggcgaggcgcctatcgactgg
caggtataa
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