Shewanella loihica: Shew_3126
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Entry
Shew_3126 CDS
T00489
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slo03016
]
Shew_3126
Enzymes [BR:
slo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Shew_3126
Transfer RNA biogenesis [BR:
slo03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Shew_3126
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Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
HVSL
Acb1
Motif
Other DBs
NCBI-ProteinID:
ABO24992
UniProt:
A3QHP4
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All DBs
Position
3718384..3718914
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AA seq
176 aa
AA seq
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MKRLFLAIAPDAAQLEQLTQLQASLDGEGRLVPRDNLHMTLAFLGQCSEAQQEALSESLA
RLAHQRRLPTFEVTLNTLEHWVKPKILCLKGAARDPGLISLFNQCQRLAQQLGLHTSEHS
FTPHITLMRKAKMLPELKAPSLSLSGHALHLYHSQSSEQGVLYKVLASWPLTAPKA
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgactctttctcgccatcgcccccgatgcggcgcagctggagcaactgacccag
ttacaggcgagcttagacggtgagggacgccttgtccccagagacaatctgcacatgacg
ctggcctttctcggccagtgcagcgaggcccagcaggaggcgctgagcgagtccctcgcc
cggctcgcccatcaacgccgtctgccgacatttgaggtgacgctcaacactctggagcat
tgggttaaacccaagatcctctgcctcaagggcgcggcgcgggatcccgggcttatcagc
ctgttcaatcaatgccaacgtctggcccagcagctcgggttacacaccagcgagcacagc
ttcacgccccacatcaccctgatgcgtaaggccaagatgctgcccgaactcaaggcgccc
agcctctccctcagcggccatgccctgcatctgtatcactctcagagtagcgagcagggg
gtgctgtataaggtattggcttcctggccgctcacggccccaaaagcataa
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