Shewanella loihica: Shew_3131
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Entry
Shew_3131 CDS
T00489
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
slo
Shewanella loihica
Pathway
slo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shew_3131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slo03019
]
Shew_3131
Enzymes [BR:
slo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
Shew_3131
Messenger RNA biogenesis [BR:
slo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Shew_3131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
ABO24997
UniProt:
A3QHP9
LinkDB
All DBs
Position
3722971..3724413
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AA seq
480 aa
AA seq
DB search
MSYDSGLILTLTQDPSSRCPIFRRISQFCKQLFEDNQNTTETTPAGLSLEIVARKHHAIS
RQHISENAIKVLYRLHKSGFKAYLVGGGVRDILLGLEPKDFDVVTNATPEEIKKLFRNCR
LVGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKVNAEGRLLRDNVYGTIDEDAERRD
FTVNALYYDISDFSIHSYGGGLQDLESRTLRLIGDPQKRYREDPVRMLRAVRFATKLGMS
IDKAAAQPISELAPLLKDIPAARMYEEVLKLFFAGQAQNNYVMMRDFGLFAPLFPLVDNL
LEEDPKGPSHKMVKAIMRNTDERVEQDKSVTPAFFYAAMLWYPLSQRADDIALESGLSQY
DAFYAAMGDVMEQQCRTISIPRRFSTPAKDIWQLQLRFERNQGTRAFKFIEHPKFRAAYD
LLLLRAEAEGGNLAKTAAWWKSFVEGSEEQRSVIARSTNKGSRSRNNRRRRSPKKTPKAE
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
ttgagttatgatagcggcctaattttaaccctgactcaagatccaagttcgaggtgtcct
atttttcgccgtattagtcaattctgtaagcagctttttgaagacaatcaaaacaccaca
gaaaccacaccagcgggactaagcctagagatagttgcacgtaaacatcatgcaatctct
cgccagcacattagcgaaaacgctattaaggtactctatcgtctgcacaaatctggcttt
aaggcctatttggtgggcggcggcgtgcgcgacatcctcctaggactcgagcccaaggat
ttcgacgtggtcaccaatgccacgccggaagagatcaaaaagctatttcgtaactgccgc
ctggtagggcgcagattccgtctggcccatatcgtcttcggccgcgacgtcatcgaagtc
gccaccctgaggggacaccatgtagacagcggcgagaagatctctaaagtcaacgccgag
gggcgcctgctgcgcgacaacgtctacggcaccatagatgaagacgccgagcgccgcgac
tttaccgtcaacgccctctactacgacatcagcgacttttccatccacagctatggtggc
ggcctgcaggatctcgagtctcgcaccctgcgtctgatcggcgacccgcagaaacgctac
cgcgaagatcccgtgcgcatgctgcgcgccgtgcgcttcgccactaagctggggatgagc
atagacaaggccgcggcgcagccgatctccgagctggcccccctgctaaaagatattcca
gccgcccgtatgtatgaagaggtgcttaagctcttcttcgccggtcaggcccagaacaac
tacgtcatgatgcgcgactttggcctgttcgcccctctctttcccctggtggataacctg
ctggaggaagatcctaagggaccgagccacaagatggtcaaggcgatcatgcgcaacact
gacgagcgggttgaacaagataagtcggtcactccggccttcttctacgccgccatgctc
tggtaccccctcagtcagcgtgccgatgatatcgccctggagagtggcctgagccaatat
gacgccttctacgccgccatgggtgatgtgatggagcagcaatgccgcaccatcagtatt
ccccgtcgcttcagcaccccggccaaggatatctggcaactgcaactaaggttcgaacgc
aaccagggcacacgtgccttcaagttcatcgaacatcctaagttccgcgccgcctatgat
ctgctgctgctgagggccgaagccgagggtggtaacctggccaagacggccgcctggtgg
aagagcttcgtcgaaggtagcgaagagcagcgcagcgtcatcgcccgcagcaccaacaag
ggtagccgcagccgcaacaatcgccgtcgtcgcagcccgaagaagacacctaaagccgaa
taa
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integrated database retrieval system
