Shewanella loihica: Shew_3311
Help
Entry
Shew_3311 CDS
T00489
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
slo
Shewanella loihica
Pathway
slo02020
Two-component system
slo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Shew_3311
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Shew_3311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slo03021
]
Shew_3311
Transcription machinery [BR:
slo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Shew_3311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
ABO25177
UniProt:
A3QI79
LinkDB
All DBs
Position
3951593..3953080
Genome browser
AA seq
495 aa
AA seq
DB search
MKASLQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLELDEEQESASIEL
QDDGVTDSFDNKYDDKIELDSSQDNSGVETSDALTQDSMPDELPVDTTWDEVYTASPNSS
SGAMRDDDMPFQGETSEGLYEHLEWQKNLTPFSDNDLAIATAIIDAIDERGYLTQTCEDI
LEAMGDPEIELDEVEAVLKRVQHFDPIGVAARDLSECLTIQLAQYSDDTPHIANARMLIK
EHLDLIAGRDFRLLMRKTKLKEDELRDAIALIQTLNPRPGLAITASRDEYVIPDVTVTKK
KGRWVVELNPDSMPKINVNQQYAAMARSTKSQADGQFIRGHLQEAKWFLKSLESRNETLL
KVTNCIVDFQQGFFEFGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFELKY
FFSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIKVARRTIAKY
REAMLIPPSNQRKSL
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgtcacttcagctcaaaatgggtcagcatctcaccatgacgccccagctacaa
caggccatacgtctgttgcagttgtcgtcattagagttgcagcaggagatccagcaggca
ttagaatccaacccgctactggagttggatgaagagcaggagagcgccagcatcgagctg
caagacgatggcgtcaccgacagcttcgacaacaagtacgacgacaagatagagctggat
tcgagccaggataactcaggggtcgagacctctgatgccctgactcaagactctatgcca
gacgagctgccggtggataccacctgggatgaggtctacaccgcctcaccaaactcaagc
tcgggcgccatgcgcgacgacgacatgccttttcagggcgagaccagcgaaggtctgtat
gaacacctggaatggcagaagaacctgacccctttttccgataacgacctggccatcgct
accgccatcatcgacgctatcgacgagcgcggttacctgacccagacctgcgaagatatt
ctcgaggccatgggcgacccagagatcgaactcgacgaggtcgaagcggtgctcaagcga
gtacaacacttcgaccctattggcgtggcggcccgtgatctcagcgaatgtctgaccatt
cagctggcccaatacagcgacgataccccgcacatcgccaacgcccgcatgctgatcaag
gagcacctggatctcatcgccggacgcgacttccgtctgctgatgcgcaaaaccaagctc
aaggaagatgagctgagggatgccatcgcccttattcagaccctgaatccccgtcccggt
ctcgccatcaccgccagccgcgacgagtacgtgatcccggatgtgaccgtcaccaagaag
aagggacgctgggtagtcgagctcaacccagacagcatgcctaagatcaacgtcaaccag
cagtatgccgccatggcccgcagcactaagagtcaggcggatggccagtttattcgcggc
cacctgcaggaagccaaatggttcctcaagagcctggagagtcgcaacgagaccctgctc
aaggtgaccaactgtatcgtcgacttccagcaaggcttcttcgaatttggcgaagaggcg
atgaagcccatggtactgaacgacatcgccgaggcggtggagatgcatgaatccaccatc
tcacgtgtgaccacgcaaaaatatatgcataccccgagagggatcttcgagcttaaatac
ttcttctccagtcacgtcggtaccgacgatggcggagagtgctcttcaacagcaatacgt
gccttcattaagaagctggttgctgcggaaaaccagaaaaagccattgagcgacagcaag
atggctcaactcttggccgaacaggggattaaggtggctagacgcaccattgccaagtat
cgcgaggcaatgcttataccgccctcgaatcagcgcaagagcttataa
DBGET
integrated database retrieval system
