Shewanella loihica: Shew_3385
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Entry
Shew_3385 CDS
T00489
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
slo
Shewanella loihica
Pathway
slo03420
Nucleotide excision repair
slo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Shew_3385
03430 Mismatch repair
Shew_3385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_3385
Enzymes [BR:
slo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Shew_3385
DNA repair and recombination proteins [BR:
slo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shew_3385
MMR (mismatch excision repair)
Other MMR factors
Shew_3385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABO25251
UniProt:
A3QIF3
LinkDB
All DBs
Position
complement(4033576..4035756)
Genome browser
AA seq
726 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVSGSNMGRMWIGTFHGLAHRLLRTHYQDANLPQSFQILDSDDQL
RLIKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLKIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHILEHYQERFKNILVDEFQDTNAIQYAWIRVLAGST
ANVMIVGDDDQSIYGWRGAQVENLHRFLQDFPAAQTIRLEQNYRSSGNILNASNELIANN
PDRLGKKLWTEDKDGEKIGLYCAFNEMDEARFIVGRITDWQDMGGNLSDCAILYRSNAQS
RVLEEALLHKGMAYRIYGGLRFFERQEIKDAMGYLRLISNKNDDAAFERIINTPTRGIGD
RTLDILRSTARQQELTLWQTCLRLLDEKVLSGRAANAVRSFMDLIVTLQQETAEQSLHRM
TDHVIQASGLKAMYEAEKGEKARARVENLEELVTAARTFVMPEDLEDMGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVEEGIFPSQMAMDEGDRLDEERRLCY
VGMTRAMKQLYITYAESRRIYGRENYARPSRFIKEIPGDYVQEIRMRTSVSAPASSNRFG
QAQPAFNGSAFNDSGFNIGQRVNHPKFGEGKVTNFEGSGAQARVQVDFLDVGSKWLVVAY
ARLETL
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactcgacggcttaaacgacaaacagcgcgaggccgtcggcgca
ccacaatctagcatgctggtgctggcaggcgcgggcagtggtaagacccgggtactgacc
caccgcatcgcctggctgatgcaagtagagcagcagagtccctattctattctggcggtg
acctttaccaacaaggccgcggccgagatgcgcgagcgtgtggagaaggtgagcggcagc
aacatgggccgcatgtggataggtaccttccatggcctggcccaccgcctgctgcgcacc
cattatcaagacgccaacttgccccagagtttccagatcctcgactcggacgaccagctc
aggctgatcaagcggatcctcaagagcctcaacctggacgagaagcagtatccgccccgt
caggcccagggctacattaacggcaagaaagatcaggggctgagacccaagcatatcgat
gcaggtggcttccccattgagcagaatctgctgaagatctatcaggtgtatcaggagtca
tgcgatcgcgccggcctggtggactttgccgagatcttgctaagggcccatgagctctgg
ctcaacaagccccatattctggagcactatcaggagcgctttaagaacatcctggtggac
gagtttcaggataccaacgccatccagtatgcctggatccgcgtgttggccggcagcacg
gccaacgtgatgatcgtcggcgacgacgaccagtctatctatggttggcgcggcgcccag
gtggagaacctgcaccgcttcctgcaggacttccccgcggcccagaccatacgtctggaa
cagaactatcgctccagcggcaacatacttaacgcctccaacgagctgatcgccaataac
ccggaccgactgggtaagaagctgtggaccgaagacaaagacggcgagaagatcggcctc
tattgcgccttcaacgagatggatgaggcccgcttcatcgtgggtcgcatcacggactgg
caggatatgggcggtaacctcagcgattgcgccatcctctatcgctccaacgcccagtcg
cgggtactggaagaggcgctgctgcacaaggggatggcctaccgcatctatggcggcctg
cgcttcttcgagcgtcaggagatcaaggatgccatggggtatctgcggctgatcagcaac
aagaacgacgatgccgccttcgagcgtatcatcaacacgccgacccgaggcataggcgat
cgtaccctggatatcctgcgcagtacggcgcgccagcaggagctgaccctgtggcagacc
tgcctgcgcctgctcgatgagaaggtgctctctggccgcgccgccaacgcggtacgtagc
ttcatggatctaatcgttactctgcagcaggagacggcggagcagtcgctgcaccgcatg
acagatcatgttatccaggcctctggcctcaaggccatgtatgaggcggagaagggcgag
aaggcccgcgccagggtggaaaacttagaggagctggtcaccgcggcgcgcaccttcgtg
atgccggaagatctcgaggacatgggtgagctaaatgccttcctctcccacgcggcgctc
gaggcgggcgagggccaggccgatgccttcaccgacgccgtgcagctgatgaccttgcac
tcggccaagggcctggagttccccatggtcttcatggcaggggtcgaggaggggatcttc
cccagccagatggcgatggatgagggcgacaggttggatgaggagcgccgtctctgctac
gtgggtatgacccgcgccatgaagcagctctatatcacctatgccgagtcgcgccgtatc
tatggccgggaaaactatgcccgtccgtcacgtttcatcaaggagatccctggcgactat
gtgcaggagatccgcatgcgaaccagcgtgtcggcgccggcgagcagcaacagattcggt
caggcccagcccgcctttaacggttcagccttcaacgattccggcttcaacatcggccag
cgggtgaatcatcccaagtttggtgaaggcaaggtgaccaacttcgagggtagcggcgcc
caggccagagtccaggtggattttctcgacgtgggcagcaagtggctggtggtggcatat
gcccgtctcgagacactgtaa
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