Shewanella loihica: Shew_3498
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Entry
Shew_3498 CDS
T00489
Name
(GenBank) DNA-directed RNA polymerase, omega subunit
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
slo
Shewanella loihica
Pathway
slo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Shew_3498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slo03021
]
Shew_3498
03400 DNA repair and recombination proteins [BR:
slo03400
]
Shew_3498
Enzymes [BR:
slo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Shew_3498
Transcription machinery [BR:
slo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Shew_3498
DNA repair and recombination proteins [BR:
slo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Shew_3498
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb6
DUF1599
Motif
Other DBs
NCBI-ProteinID:
ABO25364
UniProt:
A3QIR6
LinkDB
All DBs
Position
4184353..4184634
Genome browser
AA seq
93 aa
AA seq
DB search
MARVTVEDAVNQIGNRFDMILVAARRARQIAVQGKDPMVEEENDKPTVIALREIELGLVT
ADTLDADERQTVREREAAEIAAVAAIAEGRNTI
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgtaactgtagaagacgccgtaaaccaaatcggcaaccgttttgatatgatc
ctggttgcagcgcgtcgtgctcgccaaatcgctgtgcagggcaaagaccctatggttgaa
gaagagaacgacaagccaacggttatcgctctacgcgaaatcgaacttggcctggttacc
gccgacacactagacgccgatgagcgtcagaccgtccgcgaacgtgaagcagccgaaatc
gctgccgttgccgccatcgccgaaggccgcaacactatctaa
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