Shewanella loihica: Shew_3502
Help
Entry
Shew_3502 CDS
T00489
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
slo
Shewanella loihica
Pathway
slo00061
Fatty acid biosynthesis
slo00071
Fatty acid degradation
slo01100
Metabolic pathways
slo01212
Fatty acid metabolism
slo02024
Quorum sensing
slo04146
Peroxisome
Module
slo_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Shew_3502
00071 Fatty acid degradation
Shew_3502
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Shew_3502
09145 Cellular community - prokaryotes
02024 Quorum sensing
Shew_3502
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
slo01004
]
Shew_3502
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slo04147
]
Shew_3502
Enzymes [BR:
slo01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Shew_3502
Lipid biosynthesis proteins [BR:
slo01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Shew_3502
Exosome [BR:
slo04147
]
Exosomal proteins
Exosomal proteins of breast milk
Shew_3502
Exosomal proteins of breast cancer cells
Shew_3502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ABO25368
UniProt:
A3QIS0
LinkDB
All DBs
Position
4188286..4189941
Genome browser
AA seq
551 aa
AA seq
DB search
MDSLFKSPVDMLHHWVEQYGDSTYLKQPINGQYVNYSWREVQQKMQQIAGALRHLGLEPG
DKVAVLSKNCAEWFITDLALMHGGYISVPIYPTANADTIRYVLEHSESKAIFIGKLDYWA
DQEAGVGGDILRLAMPYDTMPAQYQWDTLLKLGHPLVEAEAPTPEQIMTIIYTSGSTGKP
KGAIQTFASYEWTCRAVVRDLKTDVEDRLLSYLPLAHITERVAIEGSSFYSGSSVAFVES
LDSFVADVQRARPTVFFSVPRLWSLFQKNIIDKIGYTKLNILLKIPFVSSLVKKKIHQGL
GLEHCHLLGSGSAPIPPSLIAWYHKIGLNICEAWGMTENSAYSIINHPFDASKIGTVGRA
VEGCSVKQGDNGELLIKSPGLMSGYYKQPEVTQASFDEDGYFRTGDLCSIDADGCVTITG
RVKDNFKTAKGKYVAPVPIERKLAQDPHVELICIIGSGLPHPVALVQLSEGAALQPKEEV
RASLKATLDSINPNLESHETVDAIIVVSEPWDVDNDVLTPTLKIKRHVLEQRFSAKVEGQ
RGGVVRWEDEL
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggactcactattcaaatcaccggtcgacatgttgcatcactgggtcgagcaatatggc
gatagcacctacctgaaacaacccataaacggtcaatacgttaactacagctggcgcgaa
gtgcagcagaagatgcagcagatcgccggcgccctgcgtcacctcggcctggagccgggc
gacaaggtggctgtgttatcgaagaactgcgccgaatggttcattaccgatctggcgctg
atgcacggcggctatatcagcgtgcccatctatcctaccgccaacgccgacaccattcgc
tacgtgctggagcacagcgaatccaaggcgatctttatcggtaagctggactactgggcc
gatcaggaggccggggtcggtggcgacatactgcgccttgccatgccctacgacaccatg
ccggcacaataccagtgggacacactgctcaagctgggccaccccttagtcgaggccgaa
gcgccgacgcccgagcagatcatgaccatcatctacacctcgggctcgaccggtaagcct
aagggagcgattcagaccttcgccagctatgagtggacctgccgcgccgtggtgcgcgac
ctcaagacagatgtcgaagacaggctgctctcctacctgccgctggcccatattaccgag
cgtgtcgccatcgagggctcctccttctattccggcagcagtgtcgccttcgtcgagagt
ctcgacagcttcgttgccgacgtgcagcgggcaagaccgaccgtcttcttctctgtgcct
cgcctgtggagcctgttccagaagaatatcatcgacaagatcggctataccaagctcaac
atactgctgaagatccccttcgtcagctcgctggtgaagaagaagatccatcaagggttg
ggcctcgaacattgtcacctgctaggttccggctctgcgcctatcccgccttcgttgatc
gcctggtatcacaagattggccttaacatctgtgaagcctggggcatgacggaaaacagc
gcctactccatcatcaaccaccccttcgatgccagcaagataggcacggtcgggcgtgcg
gtagaaggctgtagcgtcaagcagggcgacaacggcgagctgctgatcaagagcccaggc
ctgatgagtggctactacaagcagccggaggtcacccaggccagcttcgacgaagatggc
tatttccgcaccggcgatctctgctcaatcgacgccgatggctgtgtcaccatcacgggc
cgggtcaaggacaacttcaagacagccaagggcaagtatgtcgccccagtgcctatcgag
cgtaagctggcccaggatcctcacgtggagctgatctgcatcataggctctggcctgcca
caccctgtcgccctagtacagctctccgagggcgcggccttgcaacccaaggaagaggtg
cgcgcctcactcaaggcgaccctggacagcatcaaccctaacctggaatcacacgaaacc
gtcgatgccatcatagtggtgagcgagccctgggatgtggataacgacgtgctaacgccg
accctgaagatcaagcgccatgtgctagagcagagattcagtgccaaggtcgaaggccag
cgcggcggcgtggtgcgctgggaagatgagctctaa
DBGET
integrated database retrieval system
