Shewanella loihica: Shew_3634
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Entry
Shew_3634 CDS
T00489
Name
(GenBank) RNA binding S1 domain protein
KO
K06959
protein Tex
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09190 Not Included in Pathway or Brite
09192 Unclassified: genetic information processing
99973 Transcription
Shew_3634
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Tex_central_region
Tex_YqgF
Tex_N
HHH_3
HHH_9
S1
YqgF
HHH_7
S1_RRP5
HHH_6
RuvX
T2SSK
Motif
Other DBs
NCBI-ProteinID:
ABO25500
UniProt:
A3QJ52
LinkDB
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Position
complement(4332191..4334554)
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AA seq
787 aa
AA seq
DB search
MQNIAKIIAQELNVREQQVTATITLLDDGATVPFVARYRKEVTGGLDDTQLRTLYSRLGY
LRELNDRRQVILSSIQAQGKLTAELQAAIDQADSKTRLEDLYLPYKPKRRTKGQIAIEAG
IEPLVDRLLSDRQADIEALASEYLNAEAGLDEVKAVLDGARFILMERFAEDAELLQKVRQ
HLTQIAVLESHVVKGKEKEGAKFRDYFEHSEKLMNVPSHRALAMLRGRNEGVLSLSMNAD
PDSEAKSGSYCEVIIADHFNLKLSDSAVDQWLKLVVTSTWRIKIALQMETEFIAKLRERA
ETEAINVFARNLGDLLMAAPAGAKATLGLDPGLRTGVKVAIVNNTGKLMAHTTIFPHAPQ
NQWDKSIRTLANLVKMHKVELIAIGNGTASRETDKLAGELIAELKSELPTLTKIMVSEAG
ASVYSASELAAEEFPELDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQSQL
SQSLEAVVEDCVNGVGVDLNMASMPLLTQVAGLNKTLARNIVEYRDQNGQFTSRKQLLKV
PRLGPKAFEQAAGFLRIREGDNPLDASAVHPETYALVESIAKAQQQAVDALIGNTDLLKQ
IDAKAFVTEEFGLPTIEDILSELDKPGRDPRGEFKTAVFKEGVEEIKDLKVEMILEGVVT
NVTNFGAFVDIGVHQDGLVHISSLTDKFVSDPHTVVKAGDVVKVKVMEVDAERKRISLTM
RLDEKPGEKQMSHQGGKGQAKAGQGKGHQGKSPQGKSQAKGQYKQPKAPANAAMGNAFAD
AFAKLKK
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgcaaaaatcatcgctcaggaacttaatgttcgtgagcagcaagtgacg
gcaactatcactctattggatgacggcgcgacggttcccttcgtggcgcgttatcgtaaa
gaggtcacaggtggtttagacgatacccaactgcgcactctgtatagccgtctgggctat
ctgcgcgaactcaacgatcgccgtcaggtgatcctctccagcattcaggcccagggtaag
ctgaccgccgagctgcaggccgccatagatcaggccgacagcaagacgcgcctggaagat
ctctatctgccctacaagcctaagcgtcgtaccaagggacagatcgccatcgaggccggt
atcgagcccctggtggatcgtttgctcagtgatcgtcaggcagatatcgaggcgctggcg
agcgagtacctcaatgccgaggcgggtttagatgaggtgaaggcggtgctcgatggcgcg
cgcttcatcctgatggaacgtttcgccgaagacgccgagctgctgcagaaggtgcgccaa
cacctgacccagatcgccgtgctcgagagccatgtggtgaagggtaaggagaaagagggt
gccaagttcagagactatttcgagcacagcgagaagctgatgaatgtgccttcgcaccgt
gccctggccatgttgcgtggtcgcaacgagggcgtgttgagcctgagtatgaatgcggac
ccggatagcgaggccaagtcaggcagttactgcgaggtgattattgccgatcactttaac
ctcaagctgagtgattccgccgtggatcagtggcttaagctggtggtcacctctacctgg
cgcatcaagatcgcgctgcagatggagactgagtttatcgccaagctgcgcgagcgtgcc
gagacagaggcgatcaatgtcttcgcccgcaacctgggcgatctgctgatggcggcgcct
gccggtgccaaggcgacgctgggcctggacccaggcctgagaactggcgtcaaggtggcc
atagtcaacaacacgggcaagttgatggctcacaccaccatcttcccccatgcaccgcaa
aaccagtgggacaagtcgatccgtaccctggcgaatttagtgaagatgcataaggtggag
ctgatcgccattggcaatggcaccgcctcacgtgagaccgacaagctggcgggcgagctg
attgccgagttgaagagcgagctgccgacactcaccaagatcatggtgagcgaggcgggc
gcctccgtctattccgcctctgagctggcggcggaggagttccccgagctggacgtctcg
attcgcggcgccgtctctatcgcccgtcgcctgcaggatccgctggcggagctggtgaag
atcgaacctaagtctatcggcgtgggtcagtatcagcatgacgtgagtcagagtcagctg
tcacaatccctcgaggctgtggtggaagactgtgtaaacggcgtgggtgtggatctcaac
atggcctccatgccgctgctgactcaggtggctggcctgaacaagacgctggcacgcaat
atcgtcgaatatcgcgaccagaatggtcagtttacctcgcgtaaacaactgcttaaggtg
ccgcgtctcggccccaaggcattcgagcaggcggccggtttcctgcgtattcgtgagggt
gacaacccgctggatgccagcgcggtacacccagagacctatgccttggttgagtctatc
gccaaggcgcagcagcaggcggtggatgccctgataggcaacacagatctgcttaagcag
atcgatgccaaggcgttcgtgaccgaggagtttggtctgccgaccatagaagatattctc
agcgagctggataagccgggtcgtgatccccgcggcgagtttaagactgccgtgtttaag
gaaggggttgaggagatcaaagatcttaaggtggagatgatcttagagggcgtggtgacc
aatgtcaccaacttcggcgccttcgtcgatatcggcgtgcatcaggatggcctggtgcat
atctcgtcgctcaccgacaagtttgtcagcgatccccacacagtggtgaaggcgggcgac
gtggttaaggtcaaggtgatggaggtcgacgccgagcgtaagcgtatcagcctgaccatg
cgtctggacgagaagccgggcgagaagcaaatgtctcaccaaggcggcaagggccaggcg
aaagcgggccaaggcaagggacatcaaggtaaaagcccacagggcaagagccaggctaag
ggccagtataagcagcctaaggcgccggccaacgcggccatgggtaacgcctttgccgat
gccttcgccaaactgaagaagtag
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