Shewanella loihica: Shew_3776
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Entry
Shew_3776 CDS
T00489
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
slo
Shewanella loihica
Pathway
slo00061
Fatty acid biosynthesis
slo00071
Fatty acid degradation
slo01100
Metabolic pathways
slo01212
Fatty acid metabolism
slo02024
Quorum sensing
slo04146
Peroxisome
Module
slo_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Shew_3776
00071 Fatty acid degradation
Shew_3776
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Shew_3776
09145 Cellular community - prokaryotes
02024 Quorum sensing
Shew_3776
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
slo01004
]
Shew_3776
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slo04147
]
Shew_3776
Enzymes [BR:
slo01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Shew_3776
Lipid biosynthesis proteins [BR:
slo01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Shew_3776
Exosome [BR:
slo04147
]
Exosomal proteins
Exosomal proteins of breast milk
Shew_3776
Exosomal proteins of breast cancer cells
Shew_3776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
TetR_C_32
Motif
Other DBs
NCBI-ProteinID:
ABO25642
UniProt:
A3QJJ4
LinkDB
All DBs
Position
complement(4494661..4496457)
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AA seq
598 aa
AA seq
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MSLQQYHPISLMQAQSQQRGDAIALEGYGLSAPWQQISWRRFDEIGDQIAKALIASGFAA
QDKVAILSQNCPQWTCADVGVLKAKAVVVPIYPTSTLEQARYIIDDAQAKLIFVGDAEQY
RMARELLAICPSLTQIVVFDAEVALKQEDTAVHFDSLLTQTHSPEVDAELAHRLANLALD
DLLTLIYTSGTTGDPKGVMLDYRNIASVIRQHDTILPFTPGDVSLAFLPLSHVFERGWSF
YVLCRGGHNVYLKDPMTVKEAIVDIRPHTLCVVPRFLEKVYSAVQDKVNKAPDTRKKLFA
WAMSVGERQFEVSQGRAKASWWLKTQWKLAHKLVYSKLQQVLGGRLKFMPCGGAALDQNV
ASFFHGIDIPVLCGYGMTETTATVTCNTLDNRVAGSNGKTLPEVEIKLGKDNEILVRGDT
VMRGYYNRPQETADSFEDGWLKTGDAGQIDEQGNLFITDRIKELMKTSNGKYIAPQRVEG
KVGCCPFIEQVAVIADAKNYVTALIVPAFESLEAWAEEKGLHYESPMELLRHSHVIEHFE
QRLKHLQQELAGFEKIKKFTLLPEAFSMEAGLLTPTMKLRRKMIYHKYATEINAMYVK
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctccaacagtatcatcccatcagcctgatgcaggcccagagccagcaacgtggc
gatgccatcgcattggaaggctacggcttatcggccccttggcagcagatcagttggcga
cgattcgacgagattggtgaccagatcgctaaggcgctgatcgcttctggcttcgcggcc
caagacaaggtggcgatcctgtcgcaaaactgcccccagtggacctgtgccgatgtcggt
gtcctcaaggccaaggctgtggtggtacctatctatcccaccagtaccctggagcaggcg
cgctacatcatagacgacgcccaggccaagctgatctttgtcggtgacgccgagcagtac
cgcatggcccgtgaactgcttgcaatctgccccagcctgacccagatagtggtcttcgat
gccgaggtggcacttaagcaagaggatacggctgttcatttcgatagcctgctgacgcaa
acccattcgcccgaggtcgatgccgaactggctcaccgtctggctaacttggccctggac
gatctgctgaccctgatctacacctcgggcaccacgggggaccctaaaggggtgatgctg
gattaccgcaatatcgcctctgtgatccgccagcacgataccattttgcccttcacgcct
ggcgatgtgtcgctggccttcctgccgctgagtcatgtgttcgaacggggctggagcttc
tatgtgttgtgccgcggcggccataacgtctacctcaaagatcctatgacggtgaaagag
gcgatcgtcgatattcgtccccacaccctatgcgtggtaccgcgtttcctggagaaggtc
tacagcgcggtgcaggacaaggtgaataaggcgcccgacactcgcaagaagctgttcgcc
tgggccatgtctgtgggtgagcgtcagttcgaggtcagccaggggcgtgctaaggcttcc
tggtggctcaagacccagtggaaactggcccataagctggtgtacagcaagctgcagcag
gtgctgggtggcaggcttaagtttatgccttgcggcggcgcggcgctggatcagaacgtg
gccagcttcttccatggcatcgatattcccgtgctctgtggctacggcatgacggagacc
acggcgaccgtgacctgtaataccctggataaccgcgtcgccggctctaacggtaagacg
ctgccggaagtcgagatcaagctgggtaaagacaacgagatcctggtgcgcggcgatacc
gtgatgcgcggctactacaaccgccctcaggagaccgccgacagcttcgaagatggctgg
ttgaagacgggcgatgcaggtcagatagacgagcagggcaacctgtttatcacagacaga
atcaaagagttgatgaagacctccaacggcaaatacatagcgccgcagcgggtcgagggt
aaggtaggttgctgccccttcatcgagcaggtggcggtgatcgccgatgcgaaaaactat
gtgaccgcgcttatcgtaccggcgttcgagtcgttagaggcttgggccgaggagaaggga
ctacattacgagtcgcccatggagctactgcgccacagtcatgtgatcgagcacttcgag
cagcgcctcaagcatctgcagcaggagctggcgggcttcgagaagatcaagaagtttacc
ctgctgcccgaggcattttccatggaggctggcctactgacgccgaccatgaagctaagg
cgtaagatgatctaccataagtacgccaccgaaattaacgctatgtatgtgaaatag
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