Synoicihabitans lomoniglobus: PXH66_06490
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Entry
PXH66_06490 CDS
T09702
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
slom
Synoicihabitans lomoniglobus
Pathway
slom02020
Two-component system
slom02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
slom00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PXH66_06490 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PXH66_06490 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slom03021
]
PXH66_06490 (rpoN)
Transcription machinery [BR:
slom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PXH66_06490 (rpoN)
BRITE hierarchy
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_Tnp_ISL3
HTH_Crp_2
HTH_23
HTH_IclR
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
WED66495
LinkDB
All DBs
Position
complement(1657294..1658772)
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AA seq
492 aa
AA seq
DB search
MAGPGFSQGLSQRQTQSLVLAPQLRQSLKILQVAAMDLRTVIQEELQANPTLEEMPMEGI
SIDRETSEEHSTTSNNNEEDAQSGRDEMDFSQDKEFEILTKLDQDWRDYMANAGGNQPRT
SEDDEKRQHFFDSLVSVTSLQEHLMSQAEMADVDEPTLEAMRYLVGSLDDRGFLTQSVSD
IALQMGLPLDAVQSAHALLKTCDPPGIGALDLKECLSLQLVSKGRGDSLSARIVRNHFPL
LIRRRIPDIARRAGASLEDVQLAIEEIGTLDPAPGRRFADDSNRVVTPDVTVERDGDIWK
IDLNNDYIPRLRISNTYKDMIAKGSLSRQEREYLRERIRSGRFLINSIDQRQQTIERITR
EIIKVQEEFFNEGVSKLRPLTMTQIADTVGVHETTVSRAIANKYIRTPHGVFEFKFFFTP
GYQSDGGASVSNTSVKEMINDLITVEDRSRPYSDQELVAKLQGKGIKIARRTVAKYREEL
GILPSNLRREYA
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggccggtcccggtttttcccaaggtctcagtcaacgccagacccaatcactcgtgttg
gcgccgcaattgcggcagtcgctcaaaatcctgcaagtcgcagcgatggatctgcgcacc
gtcatccaagaggagttgcaggccaaccccaccctcgaagagatgcccatggagggcatc
agcatcgaccgcgaaacgagtgaggagcactccaccacgtccaacaacaacgaggaggac
gctcaatccggtcgcgacgaaatggatttctcccaggacaaggaattcgagatcctcacc
aagctcgatcaggactggcgcgactacatggcgaatgcgggtggcaaccaaccccgcacc
agcgaagacgacgagaagcgacagcactttttcgattccctcgtcagcgtcacctccctc
caggaacatttgatgagtcaggccgaaatggccgacgtggatgaaccgacgctcgaagcc
atgcgctacctcgtcggcagtctcgacgatcgtggttttctcactcaatcggtctccgac
atcgccctccagatgggcctgccgctcgatgccgtgcaaagcgcccacgcgttgctcaaa
acgtgcgacccgcccggcatcggagcgctcgatctcaaggaatgcctttcgctgcagctc
gtttccaaaggtcgcggcgactcgctctccgcccgcatcgtgcgcaatcatttccccctg
ttgatccgccgccgcatccccgacatcgcccgccgcgccggagcgagcctggaagacgtg
caactcgcgatcgaagaaatcggcaccctcgatccggctccgggccgccggtttgccgac
gacagcaatcgcgtcgtcacgcccgatgtcaccgtcgaacgtgatggcgacatctggaaa
atcgatctcaacaacgactacatcccgcgtctccgaatttcgaatacctataaggatatg
atcgcgaagggttcgctctcccgccaggagcgcgagtatctgcgggaacgcattcgttcc
ggccggttcctgatcaattcgatcgatcagcgccaacagaccattgagcgcatcacccgc
gaaatcattaaagtgcaggaggagtttttcaacgaaggcgtctccaaactccgcccgctg
accatgacgcagatcgccgataccgtcggtgtccacgaaaccacggtcagccgcgccatc
gccaacaaatacatccgcacgccgcacggcgtgttcgagttcaagttcttcttcacgccg
ggctaccagtccgacggcggcgcttcggtttccaataccagcgtgaaggaaatgatcaac
gatctcatcacggttgaggaccgcagtcgtccctacagcgatcaggaactcgtggcgaaa
ctgcagggcaaaggcatcaaaatcgcccgccgcacggtcgccaaataccgcgaagaactt
ggcatcctaccgagcaacctgcgccgcgaatacgcgtaa
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