Synoicihabitans lomoniglobus: PXH66_10100
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Entry
PXH66_10100 CDS
T09702
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
slom
Synoicihabitans lomoniglobus
Pathway
slom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PXH66_10100 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slom03021
]
PXH66_10100 (rho)
03019 Messenger RNA biogenesis [BR:
slom03019
]
PXH66_10100 (rho)
Transcription machinery [BR:
slom03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PXH66_10100 (rho)
Messenger RNA biogenesis [BR:
slom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PXH66_10100 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
DUF3086
AAA_25
AAA
AAA_22
S1CSD-TOTE-2
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
WED67203
UniProt:
A0AAF0CSG3
LinkDB
All DBs
Position
complement(2560513..2562510)
Genome browser
AA seq
665 aa
AA seq
DB search
MDDQASPSSEENAAKSPAKKTPVKRTRTRSTKTTTKKTPRKSAKKSVGAETSELPLDSAP
APAAAPKFTPTRKPVSAPEPAPATASEPAPKSEPVAPPPAPASAASTEPARSSTPESRPP
REAPESSDKSDKPDRPTDRGPADSGRDPQASGRENQGNGHNNGGGGNSDRHGGDDRESRW
GNKRDRKGKRGKKGGKWQKSDPRDRPPAQPLPPGMEEVKLGELPNPSEFEDLAALDQAAQ
SARESSAVPLILESIYPMGIAELGAKGAELGATVEGVPSRRLWMEAIFRRAAEKSLPMWD
HGWLDMTDDGYGFIVHPHVSYRLHPENSYVPPSLVKRYGLKRGHEIEVIVRPPREGERCP
AVIGVESVMGNPPEDANGVTPFEELEPYYPLERILMESPVHKDISMRAVDLLTPIGFGQR
GLIVAPPRTGKTVLMQNMANSVSHNFPKAKLIMLLIDERPEEVTDFKRHTQGEVVSSTFD
EAPSNHVHAAEMVIEKARRLVEQGDHVVILLDSVTRLARAYNALASNSGKIMSGGIEATA
LQKPKRFFGSARNIEGKGSLTILGTALIDTNSRMDEVIFEEFKGTGNMELHLDRGLSDKR
IFPAINIDRSGTRKEELIYHPAEMERVYGLRRAMQGIPPVEAMEMFIKRLRKTKTNAEFL
MSLKS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggacgatcaagcatcccctagcagcgaagaaaacgccgccaaatcccctgcgaagaaa
acgccggtcaagcgcacccgcacccgctcgacgaagacgacgacgaaaaagacgccgcga
aagtcggccaagaagtcggttggcgccgagaccagcgagctgccgctcgattccgccccg
gccccggcggctgcgcccaaatttacgcccacgcgcaaaccggtgtccgcaccggaaccg
gcgccggccaccgcgtctgaacccgcgccgaaatcggagccggttgcaccgccgcccgct
cctgcttcggccgcctcgactgaacccgcacgttcatccacgcctgaatcgcgtccgccg
cgcgaggccccggagtcatcggacaaatcggacaagcccgatcgcccgacggatcggggg
ccggcggattccggccgcgacccgcaggcgtctggtcgcgagaatcaaggcaacggccat
aacaacggcggaggtggcaactccgaccgtcatggtggcgacgatcgcgaatcccgttgg
ggcaacaaacgggaccgcaaaggcaaacgcggtaaaaagggtggaaaatggcagaagagt
gatccccgcgatcgcccgcccgcccaaccgctgccgccgggcatggaagaggttaaactg
ggtgagttacccaatccgagtgaatttgaagacctggccgcgcttgatcaggccgctcaa
tcggcccgtgaatcctccgcggttccgctgattcttgaatccatataccccatggggatc
gccgagttgggggccaaaggggccgaactgggcgcgaccgtggagggcgtccccagccgt
cgcttgtggatggaagccatcttccgtcgggcggctgaaaagtcgctgcccatgtgggat
catggttggttggatatgaccgatgatggctacggcttcatcgtgcatccgcacgtctct
tatcgtctccatccggagaacagttacgtgccgccgtcgttggtgaagcgctacgggctg
aagcgtggtcacgaaatcgaagtgatcgtgcgcccgccacgcgaaggcgaacgatgcccg
gcggtcatcggcgtggagtcggtgatgggcaacccgcccgaggacgcgaacggagttacg
ccgtttgaagagttggagccgtattatccgctcgagcgcattctcatggagtcgccggtg
cacaaggacatctccatgcgcgccgttgatttgctcacgcccatcggcttcggccaacgt
ggtcttatcgtggctccgccgcgcaccggtaaaacggtgctcatgcagaacatggcgaac
tcggtgtcgcacaatttccccaaggccaagttgatcatgctgctcatcgacgaacgcccg
gaagaagtgaccgacttcaaacgccacacccagggggaagtcgtttcctcgaccttcgac
gaagcaccgtccaaccacgtgcacgccgccgagatggtgatcgagaaagcccgccgtttg
gtggaacagggcgaccacgtcgtgattctgctcgattcggtcacccgtctggcccgcgct
tataacgcgctcgcttccaactccggcaagatcatgtcgggcggtatcgaggccacggcg
ctgcaaaaaccgaagcgcttctttggctcggcccgcaacattgaaggcaagggctcgctg
acgatcctgggcacggccctcatcgatacgaacagtcgcatggatgaagtcattttcgaa
gagttcaaaggcaccggcaacatggagctgcacctggaccgcggactctcggacaagcgt
atttttcccgcgatcaacatcgatcgctccggcacgcggaaggaagagctcatctatcac
cccgcggaaatggagcgggtctatggcctgcgccgcgcgatgcagggcatcccgccggtc
gaggcgatggagatgttcatcaagcgtctgcgcaagaccaagaccaacgccgagttcctg
atgagcttgaagagctag
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