Synoicihabitans lomoniglobus: PXH66_13990
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Entry
PXH66_13990 CDS
T09702
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
slom
Synoicihabitans lomoniglobus
Pathway
slom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PXH66_13990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slom03019
]
PXH66_13990
03009 Ribosome biogenesis [BR:
slom03009
]
PXH66_13990
Enzymes [BR:
slom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PXH66_13990
Messenger RNA biogenesis [BR:
slom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PXH66_13990
Ribosome biogenesis [BR:
slom03009
]
Prokaryotic type
rRNA helicases
PXH66_13990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
SWI2_SNF2
Cas3-like_C_2
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
WED63446
UniProt:
A0AAE9ZUC5
LinkDB
All DBs
Position
complement(3630244..3631953)
Genome browser
AA seq
569 aa
AA seq
DB search
MEKRKFAELGLSPEVLKAVDKMGFEEASPIQTAVIPLLLEGRDVVGQSATGSGKTAAFAI
PAIEMVDPKLKRVQALILCPTRELAVQVAEEVNKLAGFKRGVMEVPIYGGQSYERQYRAL
KAGAQIVIGTPGRVMDHMERGTLAFDNLKMVILDECDRMLDMGFRDDIEHILKTTPPGRQ
SLFFSATMPKLIRDMISRYTTNPASVEIKAQAQNAPSVDQVYFEVDRRSKVEALTRLIDL
HDFRHGIVFCSTKIMVDELNELLHARGYACDRLHGDISQVQRNRVTEKFKRKGFEFLIAT
DVAARGLDVDDLEVVFNYDLPNDGEDYTHRVGRTGRAGKSGRAFTFVSGREIYKLQGMIR
YARLDIRRERIPSLDQVEEARENAFFEKLRRTLEEGKFVKRERMIDRLMEQGYLSTDIAS
ALIHMMNAGAEPKPAAPAPAPSRGGRDDDRRGGGGGGGYERGGDRGERGRGGYPEKEAYD
RPGRTGRESGYTTVFFNVGRKQMITPADLVGKIAGATRLPANIVGAIDIKQRHALVDVAD
DAVDVVLQKLAGVRMKGVTVQPIPAAEAG
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacgtaaatttgcggagctcgggctctcccccgaagtgctcaaagccgtcgac
aagatgggctttgaggaggcttccccgattcaaaccgctgtcatcccgctgttgctggaa
ggccgggacgtcgtgggacaatcagccacgggctcgggcaaaactgcggctttcgctatc
ccggcgatcgagatggtggaccctaaattgaagcgcgtgcaggccctgatcctgtgccct
acccgcgagttggcggtgcaggtggccgaggaggtcaacaagctcgccggtttcaagcgc
ggggtcatggaggtgccgatttacggcggtcaaagctacgagcgccaataccgggcgctg
aaggccggggcccagatcgtgatcggcacgccgggtcgcgtcatggaccacatggagcgc
ggcacgctcgcgttcgataatcttaaaatggtgatcctcgacgagtgtgaccgcatgctc
gacatgggtttccgtgacgacatcgagcatatactcaagaccactcctccgggacggcag
tcgctgtttttctcggccaccatgccgaagttgatccgcgacatgatcagtcgctacacc
acgaaccccgcctccgtggagatcaaggcgcaggcgcaaaacgcgccgtccgtggaccaa
gtgtatttcgaagtggaccgccgttccaaagtcgaggcgctgacgcgtttgatcgatctg
cacgacttccgccatggcatcgtgttttgttcgaccaagatcatggtcgatgagctcaac
gagctgctgcacgcgcggggctacgcctgtgaccgtttgcatggcgacatctcccaagtg
caacgcaatcgcgtgacggagaagttcaagcgcaagggctttgaatttctcatcgccacc
gacgtcgccgctcgcggtttggatgtcgacgatctcgaagtcgtgttcaattacgacctg
cccaacgatggtgaggactacacccaccgcgtcggtcgcacgggtcgcgccggcaaatcc
ggccgcgctttcacgttcgtttcgggtcgcgagatctacaagctgcagggtatgatccgc
tacgcgcggctcgacattcggcgcgagcgcatcccttcgctcgatcaggtcgaagaggca
cgcgagaatgcgtttttcgaaaaactccgccgcacgttggaagagggcaaatttgtgaag
cgcgagcggatgatcgaccgtttgatggagcaaggctacttgagcaccgacattgcttcg
gcgttgattcacatgatgaacgccggcgccgagcccaagcccgcggcaccggcccccgct
ccctcgcgagggggtcgggatgacgaccgtcgcggcggtggcggcggcggcggatacgag
cgcggtggtgatcgcggcgaacgcgggcgcggtggttatcccgaaaaggaagcctatgat
cgtccgggccggaccggtcgggagtccggttacacgacggtctttttcaatgtcggccga
aagcaaatgattacgccggctgatctggtcggcaaaattgccggtgccacgcgactgccc
gccaacatcgtgggggcgatcgacatcaaacagcggcatgccctcgtcgatgtcgcggat
gatgccgtcgatgtcgtgctgcaaaagctcgccggggtccgcatgaagggcgtcacggtg
cagccgattccggcggccgaggccggttga
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