Streptomyces longhuiensis: LGI35_22345
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Entry
LGI35_22345 CDS
T09038
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
slon
Streptomyces longhuiensis
Brite
KEGG Orthology (KO) [BR:
slon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slon03019
]
LGI35_22345 (hrpA)
Enzymes [BR:
slon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LGI35_22345 (hrpA)
Messenger RNA biogenesis [BR:
slon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LGI35_22345 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
AAA_16
DUF6139
PhoH
AAA_25
SLFN-g3_helicase
NTPase_1
ResIII
TsaE
Motif
Other DBs
NCBI-ProteinID:
UDM00824
LinkDB
All DBs
Position
4826279..4830262
Genome browser
AA seq
1327 aa
AA seq
DB search
MSTQPAPVLGTLAQRLSELSLRDAHRLGRRLEGARRIRKPEARAAVLAEIEAEAEKAEAR
TAQRRGRYEALDVTYPEQLPVSQKKDEIADAIRDHQVVIVAGETGSGKTTQIPKICLELG
RGVRGMIGHTQPRRLAARTVAERIADEMDTPLGEAVGWKVRFTDQVNPDATFVKLMTDGI
LLAEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERF
SRHFGDAPIVEVSGRTYPVEVRYRPLLEEDSDEADRDQITAITDAVEELQGEGKGDILVF
LSGEREIRDTADALEKKKFRFTEVLPLYARLSHAEQHRVFQRPSGSVRRIVLATNVAETS
LTVPGIKYVIDPGTARISRYSHRTKVQRLPIEAISQASANQRKGRCGRTSDGICIRLYSE
DDFLARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGA
LNPAEKDVRKRLTEQGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDPRERP
SEKQAQADQQHARFKDETSDFLAFLNLWRYVREQQKTLGSSAFRRMCKSEYLNFLRIREW
QDIYTQLRTVAKQMGIHLSEDDAPDQQVHISLLAGLLSHIGMKDVKESTDKDPKQRGGRN
EYLGARNAKFAVFPGSALFKKPPRFIMSAELVETSRLWARVNARIEPEWVEPLAEHLLKR
TYSEPHWEKDQAAVMAYEKVTLYGVPLVAQRKVNYGRIDPEVSRELFIRNALVEGDWRTH
HKFFSDNRKLLTEVEELEHRARRRDIVVDDETLFDFYDQRVPEHVVSGAHFDSWWKHKKR
DEPELLDFERSMLIRESAEAITKDDYPDAWRQGPLKFRVTYQFEPGADADGVTVHIPLQV
LNQVTDEGFDWQIPGLREEVVIELIRSLPKPVRRHYVPAPNYAKAFLERAVPLQEPLPTT
LARELQRMVGVPVTADDFDLSRVPDHLKITFRIVDERRRTLAEDKDLEALKLRLKPKARK
AISQAAAATAERSGGESVERSGLTDWTIGTLSRVFETRRAGQPVKAYPALVDDGDTVSVR
LFDTEAEQQQAMWRGTRRLILRNIPVNPGKFASDKLTNPQKLALSANPHGSVQALFDDCA
MASCDKLIADFGGPAWDEESYRKLYDKVRAEIVDTTVRTVGQVQQVLAAWQACERRLKST
KSPTLLANLTDVRAQLTALIRPGFVTDTGLRRLPDLVRYLVAADRRLTQMPTNVQRDTSR
MEKVHEMQDEYAWLLEQMPQGRPVPQEVLDIRWMLEELRVSYFAHALGTAYPVSDKRIVK
AIDAAAP
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcagcctgcccccgtcctcggcaccctcgcccagcgcctgtccgagctgtcc
ctgcgcgatgcgcaccggctcggccgcaggctcgaaggcgcgcgccgcatccgcaagccc
gaagcccgggccgccgtactcgccgagatcgaggcggaggccgagaaggccgaggcccgc
acggcgcagcgccgcggccggtacgaggcgctcgacgtcacgtatcccgagcagcttccc
gtcagccagaagaaggacgagatcgccgacgcgatccgcgaccaccaggtcgtgatcgtc
gcgggcgagaccggctccggcaagacgacccagatccccaagatctgtctcgagctcggc
cgcggcgtgcgcggcatgatcggccacacccagccccgccggctcgcggcccgcacggtc
gccgagcggatcgcggacgagatggacaccccgctgggcgaggcagtcggctggaaggtc
cgcttcaccgaccaggtcaaccccgacgcgacgttcgtgaagctgatgacggacggcatc
ctgctcgccgagatccagacggaccgcgagctgcgcgcgtacgacacgatcatcatcgac
gaggcccacgagcggtccctgaacatcgacttcctgctcggctatctggcgcagctgctg
cccaaacgcccggacctgaaggtcgtcatcacctccgcgacgatcgaccccgagcgcttc
tcgcgccacttcggggacgccccgatcgtcgaggtcagcggccgtacgtatcccgtcgag
gtgcgctacagacccctgctcgaagaggactccgacgaggccgaccgggaccagatcacc
gcgatcacggacgccgtcgaggagctccagggcgagggcaagggcgacatcctcgtcttc
ctgtccggcgagcgcgagatccgcgacacggcggacgcgctggagaagaagaagttccgg
ttcaccgaggtcctgccgctctacgcccgcctgtcgcacgcggagcaacaccgcgtcttc
cagcgcccctccggctcggtccgccgcatcgtcctcgcgacgaacgtcgcggagacgtcc
ctgaccgtccccggcatcaagtacgtgatcgacccgggcaccgcccgcatctcgcggtac
tcgcaccgcacgaaggtgcagcgcctgcccatcgaggcgatcagccaggccagcgccaac
cagcgcaagggccgctgcggccgtacgtcggacggcatctgcatccgcctgtactcggag
gacgacttcctcgcccgccccgagttcacggacgcggagatcctgcggacgaatctcgcc
tccgtcatcctccagatgaccgcggccgggctcggcgacatcgagaagttccccttcatc
gacccgccggaccaccgcaacatccgcgacggcgtgcagcttctccaggagctgggcgcg
ctgaacccggcggagaaggacgtccgtaagcgcctcaccgagcagggccgcaagctcgcc
cagctgccggtggacccgcgcctggcccggatggtcctggaggccgacaagaacggctgt
gtgcgcgaggtcatggtgatcgcggccgcgctgtccatccaggacccgcgcgagcgcccc
agcgagaagcaggcgcaggcggaccagcagcacgcccgcttcaaggacgagacgtccgac
ttcctggcgttcctcaacctctggcgctacgtgcgcgagcagcagaagacgctcggctcg
tccgcgttccgccgcatgtgcaagtcggagtacctgaacttcctgcgcatccgcgagtgg
caggacatctatacgcagctgcggacggtcgccaagcagatggggatccatctgagcgag
gacgatgcccctgaccagcaggtgcacatctcgctgctcgccggcctgctctcccacatc
gggatgaaggacgtgaaggagtccacggacaaggaccccaagcagcgcggcggacggaac
gagtacctgggcgcgcgcaacgccaagttcgccgtcttccccggctccgccctcttcaag
aagcccccgcgcttcatcatgtccgccgagctcgtcgagacgtcgcggctgtgggcccgc
gtcaacgcgaggatcgagccggagtgggtcgagcccctcgccgagcacctcctgaagcgc
acgtacagcgagccgcactgggagaaggaccaggcggccgtgatggcgtacgagaaggtg
acgctgtacggcgtcccgctcgtcgcccagcgcaaggtgaactacgggcgcatcgacccc
gaggtgagccgcgagctgttcatcaggaacgcgctcgtcgagggcgactggcgcacgcac
cacaagttcttctcggacaaccgcaagctgctcaccgaggtcgaggagctggagcaccgc
gcccgccgccgcgacatcgtcgtcgacgacgagaccctcttcgacttctacgaccagcgg
gtcccggagcatgtcgtctcgggtgcccacttcgacagctggtggaagcacaagaagcgg
gacgagcccgaactcctggacttcgagcgctcgatgctcatccgcgagtccgcggaggcc
atcaccaaggacgactatccggacgcgtggcgccaggggccgctgaagttccgggtgacg
taccagttcgagccgggcgcggacgcggacggcgtgaccgtccacatcccgctccaggtc
ctcaaccaggtcaccgacgagggcttcgactggcagatccccggcctgcgcgaggaggtc
gtgatcgagctgatccgctccctgccgaagccggtgcgccgtcactacgtcccggcaccg
aactacgcgaaggcgttcctggagcgggccgtgcccctccaggagcccctgcccaccacg
ctcgcccgcgagctccagcgcatggtcggcgtccccgtcacggcggacgacttcgacctg
tcccgcgtacccgaccacctgaagatcacgttcaggatcgtcgacgagcggcgcaggacc
ctcgccgaggacaaggacctggaggcgctcaagctgcgcctcaagccgaaggcccgcaag
gcgatctcgcaggcggcagcggccaccgccgagcgctcgggcggcgagtccgtggagcgc
tcgggcctcacggactggacgatcggcacgctgagccgcgtcttcgagacccggcgcgcc
ggccagcccgtcaaggcgtatccggcgctggtcgacgacggggacacggtctcggtccgg
ctcttcgacacggaggccgagcagcagcaggccatgtggaggggtacgcgccggctgatc
ctgcgcaacatcccggtcaacccgggcaagttcgcctcggacaagctgaccaacccccag
aagctcgccctgtccgcgaacccgcacggctcggtccaggcgctcttcgacgactgcgcc
atggcctcctgcgacaagctcatcgcggacttcggcggccccgcctgggacgaggagtcg
taccgcaagctctacgacaaggtccgcgccgagatcgtcgacacgacggtacgaacggtg
ggccaggtacagcaggtactcgccgcctggcaggcctgcgagcgccgcctgaagtcgacg
aagagcccgacgctgctcgccaacctcacggacgtacgggcgcagttgacggccctgatc
cgccccggcttcgtcacggacacgggcctgcggcgcctgcccgacctggtgcgctacctg
gtcgccgccgaccggcgcctgacccagatgccgacgaacgtccagcgggacacgtcgcgc
atggagaaggtccacgagatgcaggacgagtacgcgtggctgctcgaacagatgccgcag
gggcggcccgtgccgcaggaagtcctggacatccgctggatgctggaagagctgcgggtc
agctacttcgcccacgcgctcggcaccgcctacccggtctcggacaagcggatcgtgaag
gcgatcgacgccgcggcgccgtaa
DBGET
integrated database retrieval system
