Streptomyces longhuiensis: LGI35_32030
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Entry
LGI35_32030 CDS
T09038
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
slon
Streptomyces longhuiensis
Pathway
slon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGI35_32030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slon03019
]
LGI35_32030
03400 DNA repair and recombination proteins [BR:
slon03400
]
LGI35_32030
Enzymes [BR:
slon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LGI35_32030
Messenger RNA biogenesis [BR:
slon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LGI35_32030
DNA repair and recombination proteins [BR:
slon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LGI35_32030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UDM02574
LinkDB
All DBs
Position
6962415..6964574
Genome browser
AA seq
719 aa
AA seq
DB search
MSNQELRAEADAILAELVGDPGGSARLREDQWQAVAALVEQRRRALVVQRTGWGKSAVYF
VATALLRRRGSGPTVIISPLLALMRNQVESAARAGIQARTINSANPEEWDTIYQEVERGE
TDVLLVSPERLNSVDFRDQVLPKLAATTGLLVVDEAHCISDWGHDFRPDYRRLRAMLAEL
PAGVPVLATTATANARVTADVADQLGTGAGEALVLRGPLDRESLRLGVVRLPDAAHRLGW
LAEHLDELQGSGIIYTLTVAAAEEATAFLRQRGFNVASYTGKTENADRLQAEIDLQENRV
KALVATSALGMGFDKPDLGFVIHLGSPSSPIAYYQQVGRAGRGVAHADVLLLPGKEDEAI
WRYFADTAFPPEAQVRQTLSALESAGRPLSVPALEAAVDLRRSRLESMLKVLDVDGAVKR
VKGGWTATGADWVYDSERYAWVAKQRSTEQQAMRDYASTSQCRMEFLREQLDDEGAVPCG
RCDNCAGAWADSSVSAEVLTGAARELDRPGVEVEPRRMWPTGMPALGIDLKGRIPVKEQC
STGRALGRLSDIGWGNRLRPLLAENAPDGPVPDDVLKAAVAVIADWARSPGGWAPTVPDA
SARPVGVVAVPSLTRPQLVGSLAQGIATIGRLPFLGALSYTGPGDVHPVRRSNSAQRLRA
LSGTFTVPDDLAAALAGAPGPVLLVDDYTDSGWTLAVAARLLRKAGSEQVLPLVLAAAG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaccaggagctgcgtgccgaagccgacgccatcctcgctgagctggtcggcgat
ccggggggttcggcacgccttcgggaggatcagtggcaggcggtggcggccctggtcgag
cagcgtcgccgtgctcttgtcgtgcagcgcaccggctggggcaagtcggcggtgtacttc
gtggccacggccttgctgcggcggcgtggctccggtcccacggtgatcatctcgccgttg
ctggcgctcatgcgtaaccaggtcgagtcggcggcgcgcgccggcatccaggcgcgcacc
atcaactcggccaaccccgaggaatgggacacgatctaccaggaggtcgagcgcggggag
accgacgtcctcctcgtgagtccggaacgcctcaattccgttgatttccgtgatcaggtc
ctgcccaagctcgcggccacgacgggactgctcgtcgtcgacgaggcgcactgcatctcc
gactggggtcatgatttccggccggactaccgccgactgcgggccatgctggccgagctt
cccgccggtgtgccggtactggccaccaccgcgacggcgaacgcgcgggtcacggcggac
gtcgcggatcagctgggtacgggagccggcgaggcgctggtgctccgcggccccctggac
cgggagagcctgcgcctgggcgtcgtccggttgccggacgctgcgcaccgtctgggctgg
ctcgccgagcatctggacgagctccagggctccggcatcatctacacgctgacggtggcc
gcggccgaggaggccaccgccttcctgcgccagcgcggcttcaacgtggcctcgtacacg
ggcaagacggagaacgccgaccggctccaggccgagatcgaccttcaggagaaccgggtc
aaggcgctggtcgcgacctcggcgctggggatgggcttcgacaagccggacctgggattc
gtgatccatctcggctcgccgtcctcgccgatcgcctactaccagcaggtggggcgtgcg
ggccgtggtgtggcccacgccgatgtgctgctgctgccgggcaaggaggacgaggccatc
tggcgctacttcgccgatacggccttcccgcccgaggcgcaggtacggcagaccctctcg
gctctcgagagtgcgggacgtccgctgtccgtgcccgccctggaggcggcagtcgatctt
cggcgcagccgcctggagtcgatgttgaaggtgctggacgtggacggcgcggtcaagcgc
gtcaagggcggctggacggccacgggagccgactgggtgtacgactccgagcgctacgcg
tgggttgccaagcagcggtcgaccgagcagcaggccatgcgcgattacgcgagtacgtct
cagtgccggatggagttcctgcgtgagcagttggacgacgagggtgcggttccgtgcggc
cgctgcgacaactgcgcgggggcctgggccgattcctcggtgtcggcggaggtgctgacg
ggggcggccagggagctcgaccgcccgggggtggaggtcgagccgcgccgcatgtggccg
acggggatgcccgcactgggcatcgacctcaaggggcgcatcccggtcaaggaacagtgc
tccaccgggcgcgccctgggacggctctcggacatcggatggggcaaccggctccgcccg
ctgctggccgagaacgcgcccgacgggcctgtccccgacgacgtcctgaaggccgcggtg
gcggtcatcgccgactgggcgcgctcgcccgggggctgggcgccgactgttccggacgcc
tctgcacggccggtgggagtcgtcgccgtgccgtccctgacccggccgcaactggtcggt
tcactcgcccagggaatcgcgaccatcggacgcctcccgttcctgggtgcgctgtcgtac
acggggcctggggacgtacacccggtacgccgcagcaactccgcccagcgcctcagggct
ctgtcaggcaccttcaccgttccagacgacctggccgccgccctggccggcgctcccggt
cccgtcctgctcgtggacgactacacggactccggctggaccctcgcggtcgctgcgcgg
ctgctccggaaggcggggagcgagcaggtcctgccgttggtcctggccgcggctggctga
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