Syntrophothermus lipocalidus: Slip_0108
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Entry
Slip_0108 CDS
T01253
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slp
Syntrophothermus lipocalidus
Pathway
slp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Slip_0108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slp03400
]
Slip_0108
Enzymes [BR:
slp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Slip_0108
DNA repair and recombination proteins [BR:
slp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Slip_0108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
TRCF
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
SNF2-rel_dom
AAA_16
ERCC3_RAD25_C
ATP-synt_F
LytB_SH3
Motif
Other DBs
NCBI-ProteinID:
ADI00908
UniProt:
D7CIP3
LinkDB
All DBs
Position
113920..117165
Genome browser
AA seq
1081 aa
AA seq
DB search
MQLKVDVDIVRSLTTRVRPGRPGMISGLAGSARSFFLYLLATRTEDTLVCLVPLEEQAYD
LHRELRGFLGPDAVCLYPSQDLVFWHEGRENSFSRMTRLSTLSRLASGHQQVKVLIATAG
SLVTKVLSPQEFRRQTLTLAVKQEINLEKTMRRLVELGYQRCQVVTDPGSFGLRGGVLDV
YPPDQTEPFRLELWADEIESIRSFDPLTQRSGKKLTSVSISPAGGTGSGQAAHLLDYVSQ
DSLVFLDERREFERCFHRQARRQEELLAAAKEKGFKTDDMDALFTWDEVEALINRHPVIY
HAFFPGQLNIQPLEFYQHISQKEMEPFFAHPELTARRIKEWVGQGYSVAVAMSDRKMKNK
IREELGLNTVPGVVVTDWDIEKGFISPTLKMAVLSDRDVWGKRPRRTGGPKKETGKLRLE
LDHLRVGDYVVHENHGIGLFQGITKMEVEGFAKEYLVIQYAGSDRLYLPVDKLEMLTRYT
GPDDKEPRLSKLGGTDWEKTKNRVRESIREMAQELLRVYALRQTVPGFAFSPDTVWQKEF
EDAFEYEETADQIRAVAEVKKDMETPRPMDRLICGDVGYGKTEVALRAAFKAVMDHKQVA
ILVPTTILAEQHYQTCLERFKNTPVVIEVLSRFRTPGQQKRILEDLKKGVIDIIIGTHRL
LSRDVRFKDLGLLVVDEEHRFGVRQKERIKALKETVDALSLSATPIPRTLHMALTGLRDL
SVIETPPPDRYPITTYVLEYNEDIIREAIRAEVERGGQVFAVHNRIQDIEMFRNHLQMLV
PEVKMEVAHGRVPEDELADIMKRFLNQEFQVLVCTTIIESGLDMPNVNTLIVDEADRLGL
AQLYQLRGRVGRSKRLAYAYFTYRPDKSVTEAAQKRLNAIREFTELGSGMKIALRDLEIR
GAGNILGPEQHGYIAAVGFDLYCRLLEEETARLNGTAPRSEGDTLLDVRIDAFIPDDYVG
DIGLKLQVYRRAMFAASIQEIDEIRAELKERFGSLPAPVENLLRLSRLRVCARSKDIKSI
STNGGVLQIRLNRAIDGAAAKLRVLGQKIKAPVQSLDSFTISVPLEGGPNLELLEQILEA
I
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
ttgcagctaaaggttgatgtcgacatcgtcaggagcctgaccactcgggtaaggccgggc
aggcctggtatgatctcggggctggcgggcagcgcccgcagcttttttttgtaccttttg
gctacgcgtactgaggacacgctggtgtgcctggttcctctcgaggagcaggcttatgat
cttcaccgggaactgcgtggttttctcggcccggatgcggtttgcctttatccctcccaa
gacctcgtgttctggcacgaagggagggagaactcgttcagccgcatgacccggctcagt
accttgagccgtcttgcttcggggcatcaacaggtcaaggtgcttatcgctacagccggt
tctctcgtgaccaaggtgctttccccacaagagtttcggaggcaaaccctaaccttggcg
gtaaagcaggagatcaatttagaaaaaaccatgcggaggctggtggaactaggttatcaa
agatgccaggtggtgaccgacccgggtagtttcggtttgcgagggggggtactggacgtt
taccctccagaccaaacagaaccttttcgcttggaactgtgggccgatgaaatcgagagt
attcggagcttcgatccgctgactcaaagatctggcaaaaagctaacctcagtgtccatt
tcgccagcggggggaacgggttcggggcaggctgctcatctcctcgattacgtctcccaa
gatagcctagtttttttggatgaacggcgagagtttgaacggtgctttcaccgacaggct
cgccggcaggaggagttgctggcagcggccaaggagaagggctttaaaacagatgacatg
gacgcgctttttacctgggatgaagtcgaggccttgataaaccggcatccggtgatatac
cacgcttttttccccgggcagctaaacatacaacctttagagttttaccagcatatatct
caaaaagaaatggaacccttttttgctcaccccgaattaacagccaggcggataaaagag
tgggttgggcaaggttactcggtggccgtagccatgagcgaccggaagatgaagaataag
atcagggaggaacttgggctcaatactgttccaggagtcgtggttaccgactgggacata
gaaaaaggctttatcagtcccaccctgaaaatggcggttttgtcggacagagacgtctgg
ggtaagaggccgcggaggacaggcgggcccaaaaaggaaacagggaagctcaggttagag
ttggaccatctgcgagtgggggattacgtggtccacgagaatcacggcatagggctgttt
caaggaatcaccaagatggaggtggaagggtttgccaaggaatacctggtcatccaatat
gcaggcagtgaccgcctgtacctgcctgtagacaaactggaaatgttgaccaggtacacc
ggacctgatgataaagagccccgtctttctaagctcggggggacggactgggagaaaacc
aaaaaccgggtacgggaatcgatccgcgaaatggcgcaagaacttttgcgtgtatatgct
cttcgccaaacggtcccggggtttgctttttcgcctgacacggtatggcagaaggagttc
gaagatgcatttgagtacgaagagacggcggaccagattcgggctgttgcagaagtaaaa
aaagacatggaaacgccgcggcctatggaccggcttatctgcggagacgtgggctacggg
aagacggaggtggctcttagggcagcgtttaaagcggtcatggatcacaaacaggtcgca
attctggttcccactacgatcctagccgaacagcactaccagacctgcctggaaaggttc
aagaataccccggtcgttatcgaggtattgagccgttttcggactccgggtcagcagaaa
cgcatcctggaagatttgaagaagggggttatcgacatcattatcggtacccaccgtttg
ctgtcccgggatgtccggtttaaggatctgggattgctggtggtggacgaagagcaccgg
tttggagtaaggcaaaaggagaggataaaggcattaaaagagacggtggacgcactcagt
ttatccgctactcccattccccgaactttgcacatggccttgaccggcctgagggatctt
tcggtaatagagacccctcctcctgaccgttaccctatcaccacttatgtgctggaatac
aacgaagacataatccgggaggcgattagggccgaggtggaaagaggggggcaggtcttc
gcggttcacaaccggattcaagatattgagatgtttaggaaccacctgcagatgctggtg
cccgaagtaaagatggaggtagcccacgggcgggttcccgaagatgagctggccgatata
atgaagcggttccttaatcaggaatttcaggtattggtatgcaccaccattatcgagtcg
ggcttggacatgcccaatgtcaacacccttatcgtggacgaggctgaccgtttagggctg
gctcagttataccagttgcggggacgggtaggccgttccaagcgcctggcctacgcttat
ttcacttaccgcccggacaaatcggttacggaagcggcccaaaagaggttaaacgccatc
agagagtttaccgaactcggatccggcatgaagatcgcgttgcgggatttagaaatcaga
ggggccggaaacatactggggcccgagcagcacggctatatagcagctgtagggtttgac
ctgtactgccggttgctggaagaagagacggctcgcttgaatggtacggcccctaggagt
gaaggtgatactctgctggatgtcaggatagatgcctttatacccgacgattatgtcggg
gacatagggctcaagttgcaggtgtaccggagggccatgtttgcggccagcatacaagaa
atcgacgaaattcgtgcagaattaaaagagcgtttcgggagcctgccggctccggttgaa
aacctgctgcgcctttctcgcttaagagtgtgtgccaggagcaaagatataaaaagtatt
tcaaccaacggaggggtgcttcaaataagacttaaccgggctatagacggggcagccgcc
aagcttcgcgttctagggcagaagataaaggcgcctgtccaatctttggacagcttcact
atttccgtacccctcgaaggtggccccaacctggagttgctcgaacagatactggaagca
atctag
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