Syntrophothermus lipocalidus: Slip_0523
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Entry
Slip_0523 CDS
T01253
Name
(GenBank) SMC domain protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
slp
Syntrophothermus lipocalidus
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slp03400
]
Slip_0523
DNA repair and recombination proteins [BR:
slp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Slip_0523
Archaeal homologous recombinant proteins
Slip_0523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
DUF745
AAA_16
ABC_tran
AAA_11
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ADI01307
UniProt:
D7CKS2
LinkDB
All DBs
Position
543084..546146
Genome browser
AA seq
1020 aa
AA seq
DB search
MKPIKIIVTAFGPYAGTQVVDFNELGGHSLFLVHGPTGAGKTTVLDAICFALYGETTSTG
RDGKNMRSHHCSLGEETKVVFEFALGDGVYKVERWPEQERPRQRGQGTRVQPAAATLYQK
GVSCQDGEWAVLASGVNAVNEKVESLLGFTAAEFRQVVVLPQGEFRKLLTASSRERQDIL
QTLFHIDNYGRIEEALRESAAEAKKQVEKLSQQRSLILQAAEARDAQELEARRHRSEMEL
KEVAEALGKAAEEVKRRQLVLNEAQKVEEKIKEKEEAETAWIQLESQRAQMEAAKRELEQ
ARRAAALVDLEEAVLSRRKEAARLKQAVEKSDRELKTAREKKQSADQALKSHLEQEPERE
DLRQKLGWLRDLLEKIELLQNARQAENQAFAVLKKAEVRWDQVQKKVADIETRREEVMKA
RLAALEVAAEAGAREKQYRDWEENLQRRQRLEELRQELSSVQESYQTAELALSQAQEGLN
RARGRYKEVQDSWVRAQAVVLANQLVPGRPCPVCGSVEHPAPAQAAGEFQGEDALRAAER
EWQRAETGFQRALKEFNSSSAQKNTAENRVRDLEAELGNVAKTDIQRLQARVVEARRLWQ
EALKASRDAGSLASELQELERQAGQAKEEASRIEKEVKDAQAKWETARAVREEREAGVPP
ELREKPVIEAEIRSVQTRLKSLNDALENARKDAEEAGRAAARAEAMLQGLTNELERTDTR
LREEETRFYSRLQENGFPDLHSYHHARKALEEIAEMEQAVSQFERALHTAKERYERARRA
AEGLPPPDLPALAAELEIARNRWEQLETKKIELENGIRADQKWLKALLKVDEKLEKAEAE
YGVLGRLADVASGKNSLGLSFRRFVLGALLDDVALAASERLKVMSRGRYQLRRTVERTRA
RGAAGLDLVIFDAYTGLERSAATLSGGESFLAALSLALGLADVVESYAGGIRLDTIFVDE
GFGSLDPETLDLAMDALIDLQLSGRLVGIISHVPELKERIPARLEIRPTEKGSTARFVVG
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatcaagataatcgtgaccgcttttggaccttatgccggcactcaggttgtg
gactttaatgaactgggtggacattccctgtttctggttcacggtcctaccggggccggg
aaaaccacggttctcgatgccatttgttttgccctctacggtgaaacaaccagtacggga
cgcgacggtaaaaacatgcgcagccatcattgttccctcggggaagaaaccaaggttgtt
ttcgagtttgccttgggagacggggtttacaaagtggaacgctggccggaacaggaacgt
cccaggcaacgggggcaggggacgagggttcagccggcagcggcgacgctttatcagaaa
ggggtgtcatgtcaggacggggagtgggcggttctggcatctggggtaaatgcggtaaac
gaaaaagtggaaagccttttgggttttaccgccgccgagtttcgccaggtggtagtctta
ccccagggcgagtttcgcaaactgttaacggcgagttcccgggagcgccaggatatcctc
cagaccctctttcacatcgacaactacggccgcatagaggaagccctgcgggagtccgct
gcggaggccaaaaaacaagtagaaaaactttctcagcagcggagtctgattctgcaggca
gccgaagcccgggacgcacaagaattggaagcaagacgtcatcggagcgagatggagctg
aaagaggtagccgaggccctgggaaaggccgcggaggaagttaaacggaggcagctggtt
ctaaacgaggcccaaaaggtcgaggaaaaaattaaggaaaaagaagaagcggagactgct
tggatccaactcgaatcgcaaagggctcaaatggaggcggcgaaacgcgagttggaacag
gccagaagagcggcagccttggtcgatttggaggaagcggtgctatcgcgccgaaaggag
gctgcccggctaaaacaggcagtggaaaaaagcgatcgggagcttaaaaccgcgagggaa
aagaaacagtcggcagaccaggccttgaagagccacttggaacaggaaccggaaagggaa
gatctccggcagaaactgggctggcttcgagacttactggagaagatagagcttctccaa
aacgcgcgccaggccgaaaaccaagcctttgcagttttgaagaaagcagaggtgcggtgg
gaccaagtccaaaagaaggttgccgatatcgaaaccaggcgggaagaggttatgaaagcg
cgcttggcggccttagaagtggcagcagaggctggggctcgcgaaaaacagtaccgggac
tgggaagaaaacctacagcgccgccagcggctggaagagttgaggcaggagctgtcctct
gtccaagaaagctatcaaacagcagagctggctcttagccaagcccaggaaggtctgaat
cgggcccggggacgctacaaagaggtgcaggacagttgggtgcgggcccaggcggttgtc
ctcgctaaccagctggttcccggaaggccctgcccggtttgcggatcagttgagcacccg
gcgccggctcaggcggcaggtgaatttcagggagaagatgcgttgagagccgccgaaaga
gaatggcagcgggctgagacgggtttccaacgggcgctcaaagaattcaattccagttct
gcccaaaagaacacggctgaaaacagggttcgggatctcgaagccgagctggggaacgtg
gcgaaaacagacatccagaggcttcaggcccgagttgtcgaggccagacgcctctggcaa
gaagcgctcaaggcctctcgggacgccggaagtttggcctcggaactccaagagctggaa
aggcaggcgggacaggctaaagaagaggcatctcggatcgaaaaggaggtgaaagatgcg
caggcgaagtgggaaacggctcgggcggttcgggaggagagagaagccggggttccgcct
gagctgagggagaaacctgtcatcgaagccgaaatcagatcggttcaaacaaggctgaaa
agcctgaacgatgccttagaaaacgccagaaaagatgcggaagaagcgggaagggctgcg
gctcgtgcggaagcaatgctacaaggattaactaatgaattggaaagaaccgatactcgg
ctaagagaggaggaaacccgtttctattcacgcttgcaagaaaacgggtttcccgacttg
cattcataccaccatgctcggaaagccctcgaagaaatcgccgaaatggagcaagcagtc
agccagttcgagcgagcattgcatacggccaaagagcgttacgagcgggcccggagggca
gcagaggggttgccccctccagatttgccagcactggcggccgaactagaaatagcccgc
aataggtgggaacaactggagaccaaaaaaatagaactggagaacggtatcagggccgac
cagaaatggcttaaggctttgctcaaggtagacgaaaagctggaaaaagccgaagccgaa
tacggggtattaggtcgcctggcagatgtggccagcgggaaaaacagcctcggccttagc
ttccggaggtttgtactaggtgctttgctggacgatgtagccctggccgccagcgagagg
ttgaaggttatgagccggggacgttaccaactacggaggacggtagagcgtacgagagcg
cggggagctgcaggattggacctggttatattcgatgcctataccggactggaacgatcg
gcagccaccctgtccggaggagaaagctttcttgctgccttatccctggccttgggtttg
gccgacgtggtagaaagctatgccgggggtattcggctggataccattttcgtggatgaa
ggctttggcagcctcgatccggagaccctggacctggctatggatgctctaatcgacctt
caactatctggacgcctggtaggtatcatttcgcatgtaccggaattgaaggagaggatt
ccagcccggctcgagatacggcctacagaaaaaggcagcaccgcccggttcgtggtcggc
taa
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