Syntrophothermus lipocalidus: Slip_0594
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Entry
Slip_0594 CDS
T01253
Name
(GenBank) putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily
KO
K03093
RNA polymerase sigma-I factor
Organism
slp
Syntrophothermus lipocalidus
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slp03021
]
Slip_0594
Transcription machinery [BR:
slp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Slip_0594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
RP-C
HTH_24
Peptidase_M13_N
HTH_36
EF-hand_PLCG1
BA_2335-like
Motif
Other DBs
NCBI-ProteinID:
ADI01378
UniProt:
D7CKZ3
LinkDB
All DBs
Position
complement(620312..621034)
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AA seq
240 aa
AA seq
DB search
MTAARSRSEQEKTLKQIREAQDGNTQARELLISQHLGFIKALVLKNVASNEDIINRDEYS
VALIAFNEAISSYKPGLRSFQSFAADVIKRRLIDYRRSTEKHRKRIIYVDDISNPLPDQD
ALVNGEELEIRMEMKDFVQKLAQYGVSLRDLVQVTPKHLDSRRLCAQLAQTITDRPDMRD
YFTKYGTIPVQRLSEASGISPKTVKRHRKYIIALCLVLLSDLETMKRYVKGLGKGSDAHA
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
gtgacagcggcgagatcacgctcggaacaggaaaagacattaaaacaaatacgagaggca
caggacgggaacacccaagcccgggagcttctcatttcccagcacttggggttcataaaa
gcgctggtactgaaaaacgtggcttctaacgaagatataataaaccgggatgagtacagt
gtagctctcattgcctttaacgaagccatcagttcctacaaaccaggcctacggtcgttc
cagtcctttgcagcagacgtgataaaaagaaggctcatcgattaccggcgttcaacggaa
aagcatcgaaagcgcatcatatacgtagacgatataagcaaccctctgcccgaccaagat
gctctggtaaacggggaagaactcgaaatccgcatggaaatgaaagactttgtgcaaaag
cttgctcagtatggtgtaagcctacgggacctggtgcaagtgactcctaaacaccttgat
tcgcgccgtttgtgtgcgcaactagcccaaaccataaccgacagacctgatatgcgcgac
tacttcaccaaatatggtaccatcccggtacaacggctgtctgaagcgagcggtatcagc
cccaaaacggtgaagcgccatcgcaagtacataatcgccctttgcctggtactgctgagt
gatctggaaacgatgaagcggtatgtaaagggcctggggaaaggcagtgatgctcatgcc
taa
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