Syntrophothermus lipocalidus: Slip_0618
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Entry
Slip_0618 CDS
T01253
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
slp
Syntrophothermus lipocalidus
Pathway
slp03420
Nucleotide excision repair
slp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Slip_0618
03430 Mismatch repair
Slip_0618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slp03400
]
Slip_0618
Enzymes [BR:
slp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Slip_0618
DNA repair and recombination proteins [BR:
slp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Slip_0618
MMR (mismatch excision repair)
Other MMR factors
Slip_0618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADI01402
UniProt:
D7CL17
LinkDB
All DBs
Position
641643..643772
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AA seq
709 aa
AA seq
DB search
MKLVEGLNQEQKEAVLHVDGPCLVLAGAGSGKTRVLTTRLAYLCHTGIRPRNILAITFTN
KAAREMKERVERLIPGFTGQWIQTFHATCYRILRQEIDRLGYSRDFSIVDEAEQRALVKE
CLQDLNEYRIKPEVIAYFINQAKNSLASEKKDLGSSTLPVNLREVYQKAFRLYQARLKAM
NGLDFEDLILLTIRLFRENEDVLGKYRDRFKYIMIDEYQDTNYAQYVLSHTLAQEHRNLF
IVGDPDQSIYSWRGAEPENIKRFLRDYPEARIIKLEKNYRSTKVILDAANAVIRHNCERE
EKVLKTDNPVGEKLRRFRAVDGQEEAQFVAETIAELVRQGYRYRDMAIFYRTHAQSRYLE
DVLKRRLVPYYIVGARSFYQRKEVRDVLAYLKLAVNPFDTLSFRRVINLPRRGVGDVTLK
RIEEFAAASALPVLEALANPADIPGISRRVAEALEEFYGLIKFVQVLGENEPVMAVLEQL
LESSGYVEDICRRDPLGAEERIENLRELKSVALEFDRTRGGNLGEFLAEVSLVQDTDTTD
VSDAVAMMTFHSAKGLEFPVVFMTGMEEGIFPSAKAETEAEIEEERRLCYVGITRAKERL
FLSNAFSRVLWGYEMRNLPSRFLGEIPRGLFISDHAADPGFTEILPETTDPKLELAPGDV
VEHRKFGQGIVIDVLEDGEIAIVDFVVAGTKMLRTDIAPMVKVEGSDGW
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgaagctagtggaaggattaaaccaagagcagaaggaagcggttttacatgtggatggt
ccgtgtttggttctggcaggagcaggcagcgggaagacccgggtactaacgacccgcctg
gcttatttgtgtcatacaggtattcgtcccaggaacatcctagccataacttttaccaac
aaggccgcccgcgaaatgaaagaacgggtagaacgattgattccgggttttaccggccag
tggatacaaacatttcacgctacctgctaccgtatcctgcgtcaggagatagaccgcctg
ggttacagccgggatttcagcattgtggacgaggccgaacagagagctttggtcaaggag
tgtttacaagacctgaatgaataccgaatcaagccggaagtaatagcctattttataaat
caagccaaaaacagcctggcctcggaaaaaaaggatctcggaagttcgaccttgccagtt
aatctgagggaagtttaccaaaaggcctttcgcctttaccaggcccggttgaaggccatg
aacggccttgacttcgaggacttaattttattgaccatacgcctatttcgggaaaacgag
gacgtgctgggtaaataccgggatcggttcaagtacataatgatcgacgaataccaggat
acaaattatgcgcagtacgttttaagtcataccctggcgcaagaacaccgtaacctcttc
atagtaggggacccggaccaatccatttacagttggagaggggccgaaccggaaaatatc
aagcgatttttgagggattatccggaggccagaatcatcaagctggaaaaaaactaccgg
tctaccaaggttatattggacgcagccaatgcggtcataagacataactgcgaacgcgaa
gaaaaggtgctgaaaaccgataatcccgtcggggagaagttgaggcgttttcgggctgta
gatggccaggaggaagcacagttcgttgccgaaactattgcggagttggtccggcagggg
taccgttaccgggatatggctattttttaccgcacccatgctcagtcccgctacctggaa
gacgttttaaaaagaaggctggtgccttactatattgtaggcgcccgcagcttctaccag
cgaaaagaagttagggatgtactggcctacctgaaactggcagtaaacccttttgacacg
ctgagttttaggcgcgtcatcaatcttccccgccggggggttggggacgtcaccctgaag
aggatagaagaatttgctgctgcttctgccttaccggttttggaagcccttgctaatcct
gcggatattccggggatttcgcgccgggtagctgaggccttggaggagttctacgggcta
atcaagtttgtgcaggttttgggagaaaacgagccggtaatggcagttttagaacagctc
ctggaatcatcaggatatgtcgaagacatttgtcgaagggatccgctgggggcagaggag
aggatagaaaacctgcgcgagctgaaatcggtagccttagaattcgaccgaacgcggggt
ggaaacctgggagagtttttagccgaggtttctcttgttcaggatacagatacgacggat
gtttccgatgcggtggcgatgatgacgttccacagtgccaaaggtctcgaatttccggtg
gttttcatgaccgggatggaagaaggtattttcccctcggctaaagcggaaaccgaagcc
gagatcgaagaggaacggaggctgtgttatgtcggtatcaccagggctaaggaaaggttg
ttcttgagcaacgcgttcagccgcgttttgtggggttatgagatgcgaaacctgccttcc
cgtttccttggcgagatacctagagggcttttcatttcagaccatgctgcggaccccggg
tttacggagatactcccggaaaccacagacccaaagctggagttggccccgggagacgtg
gtagagcaccgtaagtttgggcaaggtatagtgattgatgtgttggaggacggggagata
gccatagtcgactttgtcgtagctgggaccaagatgttgaggaccgatatagcacctatg
gtgaaggtagagggatctgacggttggtga
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