Syntrophothermus lipocalidus: Slip_0767
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Entry
Slip_0767 CDS
T01253
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
slp
Syntrophothermus lipocalidus
Pathway
slp03410
Base excision repair
slp03430
Mismatch repair
slp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Slip_0767
03430 Mismatch repair
Slip_0767
03440 Homologous recombination
Slip_0767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slp03400
]
Slip_0767
DNA repair and recombination proteins [BR:
slp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Slip_0767
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Slip_0767
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Slip_0767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DAGK_cat
Motif
Other DBs
NCBI-ProteinID:
ADI01547
UniProt:
D7CLG2
LinkDB
All DBs
Position
796079..798934
Genome browser
AA seq
951 aa
AA seq
DB search
MRKFPIWTVKTAENRVIREIQESLGISEVLARLLYLRGIRTREEARLFIDGGLDDLCDPF
LLPDLAAAVNRLEKARQYREKVLIYGDYDVDGICSVVMLKEFLDYLGVENSYYIPNRFSE
GYGLNEEAVKEAVQKQYQLLVTVDCGISSCREIELAAGLGLDVVVTDHHQPPEQLPPAVA
IVNPKLVQEPGLQELAGAGVVFKLVTAWADIAAPEYDKTKWLDLVCLATVADIVALLGEN
RLLVKAGLEFVAKTERPGLRALLDESGLNGKSLKAWHIGYVVAPRLNAAGRIGDADVAVE
LLLTQDPGKGLDLARFLIQQNRQRQEVEAQILQQATKEVADSADIEAQRVLVVAGDGWHQ
GVIGIVASRLTEQFGRPTILISWDEDYGKGSGRSVDGFDLYQALCQCSHILNRFGGHRYA
AGLILERARFHEFREEINRVAASMTGSAGLVQRLEIDCEVALDDIDCQLLNELAMLEPFG
EGNPVPNLLLRRSHLSDLMWVGKNSEHAKFWVDNGKRKIEAIAFNAKIEKEVDYSSFLVD
LVFQPELDVYNGDTRLVLKVRDMKPSWAADDSQARAPAVGVSPPPPVLLSLGQKVENELR
CGRPVVLVYPTLRCLDRHLLSMQSFLSRRALAILSGRQSREMRNNVIRMLLAGENRLFLT
TEVLFKYYIENYVLPERLQLLCFVMPEGQATDLANFGRNHLEVTICLPDSRDFDHAVQVV
EPAKRLKRAFIYANRAVTVHRLCGERVGLISEAGIDDIEKRWQARDRFRQGLGNGLVSDG
KFGLALPFLSEVKEVLFADSPFGLSEALGFMSQASRPEEGLFFCFTEEDLASNRRYLERI
FPGPDSVNSFLGYVKELDRTEVAIDQKMMLELNEYMGRKLETTELKAVLQILRELDVCRT
IMNNGRVQIVFMDDGSGKANITESLYFLEGYATRKSFLRWCEVCRRARVVI
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagtttccgatttggacagtgaaaacggcagaaaaccgagtgataagggaaata
caagaaagtttggggatatctgaggttttggcgcgtttgctttacttgcgtgggattaga
acgcgtgaagaagcgcgcctgtttattgatggtggtttggacgatttatgtgatccgttt
ttgttgcccgatttagccgctgcggtaaatcggttggaaaaggcacgccaataccgcgaa
aaggtactcatttacggtgattacgatgttgacggaatctgcagtgtggtgatgctgaaa
gagttcctagattatctgggagtggaaaacagctattacatcccgaatcgtttctccgag
ggttacggtctcaatgaggaagcggttaaggaagccgtgcaaaagcaataccaactactg
gtaaccgttgattgcgggatttcttcctgccgggaaatcgaattagccgctggtttggga
cttgatgtagtggttaccgaccatcatcagccgccggagcaattgccgccagctgtggcc
atagttaatcccaagcttgttcaagaaccgggcctacaggaactggccggggctggagtc
gtgtttaagctagtcactgcttgggctgatatagctgcgcccgagtacgataagactaag
tggctggacctggtttgcttggctaccgttgccgacatagtcgctctgctgggtgaaaac
aggttgctggttaaggctggattggagttcgtcgcaaaaacggaacgacccggactcagg
gctcttttggatgagagcgggttgaacggtaagagtcttaaggcctggcacattgggtat
gtggtggcgccgaggcttaatgctgctggcaggataggagatgcagatgttgcagtagaa
ttacttcttactcaagaccccgggaaagggctggatctcgccaggtttctgattcaacaa
aaccgtcaacgacaggaggttgaagcccaaatactacagcaggccactaaagaagtagca
gacagcgcagatattgaagcgcagagggtacttgtagtggccggagatggctggcatcaa
ggagtaatagggattgtagcttcgcggctgacagaacagttcggacgtcctaccatattg
atctcctgggacgaggactacgggaaaggatcgggacggagtgttgatggctttgatctt
tatcaggctctgtgtcagtgctctcatattttgaaccggttcggggggcaccgctatgcg
gctggattaattttggaaagggctcgtttccacgaatttcgtgaagaaatcaatagagta
gcggcttcgatgaccgggagtgcagggttagtgcagaggttggagattgattgtgaagta
gccctagatgacatagactgtcaactcttaaatgaactggcgatgttagaaccttttgga
gagggaaacccagtacccaacttgcttttgcgccggtcccacttatccgatctgatgtgg
gtgggaaagaactcggaacacgcgaagttttgggtcgacaatggcaaaaggaaaatagag
gccatcgctttcaacgccaaaattgaaaaagaggtggattattcgagttttttggttgac
cttgtattccaaccggagcttgatgtttataatggagatacgaggcttgtacttaaggtc
agggatatgaagcctagttgggcagccgatgattcacaggcccgggcccctgccgtagga
gtgtcaccgccgccacctgttctgctatcgctgggacaaaaggttgaaaatgaactcaga
tgcggtagaccggtagtgttggtttaccccactttgcggtgtttggacaggcatctttta
tctatgcaaagtttcttgtcacgtcgagctttagctatacttagtgggagacagtcccgg
gagatgagaaataacgtaatacggatgctgttagcgggcgagaaccgcttgtttttgaca
accgaggtactttttaaatactatatagaaaactatgttcttcctgagcggttgcaatta
ctgtgctttgtcatgccggaggggcaagccactgacttagcaaattttggacggaatcac
ctcgaagtgacgatctgtttgcctgattctcgtgatttcgaccatgcggtgcaggtggta
gaaccggcaaaaaggttaaaaagggcgttcatttatgccaaccgtgcggttacggttcac
cgtctttgtggtgaacgggtgggtttgatatcagaagcgggaatagatgatatagagaag
cgttggcaggctagggataggtttcgtcaggggttaggaaatggtctggtttccgacggt
aagtttggattggcgttaccgtttttgtcggaagtaaaagaggtgttgtttgccgattct
ccctttgggctgagcgaagcgctgggttttatgagtcaggccagtcgtccggaagaaggg
ttgtttttctgctttacggaagaggatttggcttcaaaccggcgttatttggaacggatt
ttccctggtccagattcagttaattcttttctggggtatgtcaaagaactggataggacc
gaggtagccattgatcagaaaatgatgttagaactgaacgagtacatgggaaggaagcta
gaaacaacggagttgaaggcggttctgcaaattctccgtgagttggacgtatgccgcacc
attatgaataatgggagggttcaaatagttttcatggacgacggaagtggtaaagcgaat
attaccgaatccttatactttctcgaggggtacgcgacccgaaagagttttctccgatgg
tgcgaggtgtgtcgaagggcgcgggtggtgatttga
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