Syntrophothermus lipocalidus: Slip_1006
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Entry
Slip_1006 CDS
T01253
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
slp
Syntrophothermus lipocalidus
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slp03016
]
Slip_1006
Enzymes [BR:
slp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Slip_1006
Transfer RNA biogenesis [BR:
slp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Slip_1006
Prokaryotic type
Slip_1006
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
DKCLD
Motif
Other DBs
NCBI-ProteinID:
ADI01785
UniProt:
D7CM50
LinkDB
All DBs
Position
1037801..1038715
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AA seq
304 aa
AA seq
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MQRCHGFLNVDKPRGITSFEVVKRVRRFFPRQKVGHLGTLDPIAEGVLPLAVGGATRLIE
FLMDVTKGYRAEMVLGGVSDTQDAWGNITVVADELSFSLSDIEKVLELFRGEILQVPPMY
SAVNYRGRRLYELARQGVEVSLEARPVTVHLLQVVQAELTQPPYRVILDVVCSKGTYIRT
LCHDIGQKLGCGAYLTKLVRVFSGPFSLEYAVKLAEVEERLAAGDCSLLLPLDFPLTSMP
KVVLENENDVIRLKNGNNISINAGLAAGPVLVYTLDRDLIAVGHLAETKGKGTVLKPVKV
LGTQ
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
ttgcagagatgtcacgggtttctgaatgttgacaagccccggggtatcacctcctttgaa
gtagtgaagagggttcgaaggtttttccctcgccagaaggtggggcacctggggactcta
gaccctatagccgaaggggtgctgccgctggcagtgggtggagccacacgcctaatagag
tttttgatggatgttaccaaaggctaccgggcagaaatggtgttgggaggggtttcagat
acccaggatgcctgggggaatattaccgtggttgccgacgaattaagctttagtctttcc
gacatagagaaggttttagagctgtttcgcggagagatacttcaggttcctcctatgtat
tccgccgtcaactaccgcgggcgccgcttgtatgagctggcacggcagggagttgaagta
tcgctagaagcccggcccgtaactgtacatttgctgcaagtagtacaggctgaacttacg
caacctccttatcgagttatcttggatgttgtgtgttcaaaaggaacttatattcgaaca
ttgtgtcatgatattggacagaagctggggtgcggagcctatctcaccaagttagttagg
gttttttccggtcccttctccttagaatacgccgttaaacttgcagaagtggaagaacgg
cttgcggcgggggattgttctctattattgcctctggattttcctttaacttcgatgccc
aaggtagtgttagagaacgagaatgatgttattcggctgaaaaacggcaataatattagt
attaacgctggtttggcagcaggtccggtcttggtctatactttagaccgtgatctcata
gctgtaggtcacctcgcagagaccaaggggaaggggacggttcttaaaccagtgaaagtg
ctgggtactcagtaa
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