Syntrophothermus lipocalidus: Slip_1009
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Entry
Slip_1009 CDS
T01253
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
slp
Syntrophothermus lipocalidus
Pathway
slp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Slip_1009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slp03019
]
Slip_1009
03016 Transfer RNA biogenesis [BR:
slp03016
]
Slip_1009
Enzymes [BR:
slp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Slip_1009
Messenger RNA biogenesis [BR:
slp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Slip_1009
Transfer RNA biogenesis [BR:
slp03016
]
Prokaryotic type
tRNA degradation factors
Slip_1009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
ADI01788
UniProt:
D7CM53
LinkDB
All DBs
Position
1040343..1042496
Genome browser
AA seq
717 aa
AA seq
DB search
MEHKVYQTEIAGRPLRVEIGKVAKQANGAALLYYGDTVVLVTATASKEPREGIDFFPLTC
DYEERLYAVGRIPGGFIKREGRPTEAAILSARLMDRPIRPLFPKGFRNDVHVVATVMSVD
QDNPPNVTAIIGASIALSISDIPFAGPIGAVIVGMVDGEFVINPTVEQSARSQMHLTVGG
TRDAIVMVEARANEVPEETMLDAIFFAHEEIKRIIDFQEKIVAEIGLPKREVVVPEIDPE
IEAAVREYGIPILEEAIRCSDKLQREARTEAAADEIKQHFAEIYPEQDKEVASIIDKITK
EIVRRMILDEGIRVDGRRLNEIRPVSCEVGILPRTHGSGLFTRGQTQVLSVTTLGAVGEE
QILDGLGVEESKRYLHHYNFPPYSVGETRPIRGPGRREIGHGALAEKALEAVLPSQEEFP
YTIRVVSEVLESNGSTSMGSVCGSTLSLMHAGVPIKRPVSGIAMGLVKEGDRFAVLSDIQ
GIEDALGDMDFKVAGSAEGVTALQMDIKIPGVTREILHAALKQAKEGRMYIMDIMMKAIS
QPNPELSPYAPRMIRMMIDTDKIRQVIGPGGKIIKKIIDETGARIDIEDDGSLFIVASDQ
ESAEKAKYYVECLTKDVEVGKTYVGKVVRIADFGAFVEIIPGVLGLPGKEGLVHISKLAE
NRVAKVRDVVDIGDEILVKVTEIDSQGRINLSRREALQQAQRAGSTTGHKKNTRSAK
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atagaacacaaggtttaccaaaccgaaatagcagggcggcctctacgggtcgagataggg
aaagtggctaaacaggccaacggagcggctttgctttattacggcgacaccgttgtgctg
gtaacagcgaccgcttccaaggagcctagagagggcatcgacttcttccctctaacctgc
gattatgaggaaagactgtacgcggtagggagaataccgggaggtttcattaagagggaa
ggcaggcccactgaagctgctatactttcagctcgtctgatggacaggccgatcagacct
cttttccctaaaggtttccgtaatgatgtccacgtagtagcgaccgtgatgtccgtggat
caggataacccacccaatgtaaccgccataatcggggcatctattgctctttccatatcg
gatatcccgtttgctggtccgataggggctgtgattgttgggatggtggacggggagttt
gttattaaccccacagtcgaacaatcagccaggagccaaatgcacttgacggtgggtgga
acccgagatgccatcgtgatggttgaagcacgagctaatgaagtgcccgaggaaacgatg
ttggatgccattttcttcgctcacgaagaaatcaagcgtatcatcgattttcaggaaaag
atcgtagcagagataggtttgcccaaacgagaagtcgtggttcctgagatcgatccggag
atagaagcggctgtaagggaatacgggataccgatactggaggaagccatccgctgctcc
gacaagctgcaaagggaggcccgcaccgaagctgcggcagatgaaattaagcagcacttc
gcagagatttacccggagcaagataaagaagtagccagtatcatcgacaagattaccaaa
gagatagtcaggcgcatgattctggacgaaggtatacgggtggatggacgtagactcaac
gagatcaggcccgtgtcttgtgaggtcgggattttgccgcggacccacggttcgggcttg
tttaccaggggccagacccaggttctgtcagtgactactctcggtgcggttggagaagag
cagattctggacgggctgggagtggaagaatctaaacgttatcttcatcactacaatttt
ccaccttacagcgtaggggaaacccgtccgattcggggaccaggccgcagggaaatagga
catggggctttggcggaaaaggccctagaagcggtcttgccttctcaggaggaatttcca
tacaccatacgggtggtatccgaggtgttggaatccaacggctccacgtccatgggtagc
gtgtgcggcagcactttatcgctgatgcatgccggagttcccattaagaggccggtatcc
ggtatagccatggggctggtcaaggaaggtgaccggtttgccgtattaagcgacattcag
ggtattgaagacgccttaggcgacatggactttaaagttgccgggtctgctgagggtgta
actgctctgcagatggatatcaagatacccggggtcacccgtgagatcctgcatgcagcc
ttaaagcaggccaaggaaggccggatgtacatcatggatataatgatgaaggctattagc
cagcccaatccggagctttcaccgtatgctcccagaatgataagaatgatgatagatacg
gacaagatacgccaggtgataggacccggaggcaagattatcaagaagataatagatgaa
acgggggctcgtattgacatcgaagatgacggtagcttattcatagtcgcgtcggaccag
gagtcggcggagaaggctaagtattacgtcgagtgtttaactaaggatgtagaagtcggt
aaaacctacgtaggcaaggtggtgcggatagccgatttcggggcttttgtagagataatt
cccggggtgctgggtttgcccggcaaagaaggattggtgcacatttctaagttagccgag
aatcgggtggccaaagtccgagacgtggtcgatatcggcgatgaaatcctggtcaaggtt
accgaaatcgactcccaaggacgaataaacctatcgcgcagagaggctttacagcaggcc
cagcgggccggttcaacgaccggacacaaaaagaacacaagatcagccaagtaa
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