Syntrophothermus lipocalidus: Slip_1027
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Entry
Slip_1027 CDS
T01253
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
slp
Syntrophothermus lipocalidus
Pathway
slp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Slip_1027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slp03019
]
Slip_1027
Messenger RNA biogenesis [BR:
slp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Slip_1027
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ADI01806
UniProt:
D7CM71
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All DBs
Position
1057178..1058842
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AA seq
554 aa
AA seq
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MLIELDRIYVIPLGGLGEIGKNMMLVRYQDNIVVIDAGLMFPEEELLGIDIVIPDMTYLF
ENRDKVKAVLVTHGHEDHVGALPYLLREIDVPIYGTKLTIGIIEAKLREHGLTGARLNIV
KPRDKINVGPLEAEFIRVSHSIPDTLAIAIHSPVGTILHTGDFKLDQTPVDGEVVDFRKF
AELGEKGVLLMLSDSTNAERPGYTMSERVVGNTFDELFGRCEGRIIITTFASNVHRIQQA
INTACKYNRKVAVVGRSMINNVNIARELGYIAIPEGTLVDVELINRYPDNQLVIVTTGSQ
GEPMSALTRMATAEHRWVSIQPGDTVIISATPIPGNEKLVARTIDMLYKQGAEVVYGPAT
GVHVSGHASQEELKIMVNLIRPRYFIPIHGEYRHLKKHARLAENLGIPRSRIFVVENGQV
IEVGRKKAGVIGKVTSGRVLVDGLGVGDVGNIVLRDRKQLSSDGIIIVVVTINKETGTVI
AGPDIVSRGFVYVRESEQLIEEAREKVREALLVCEKKGATEWASIKSHVREALSKYLYEK
TKRRPMILPIIMEV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
gtgttaatcgagttagacaggatatatgtcattcccctgggcggcttaggggagattggc
aagaacatgatgctggtacgataccaggacaatatcgttgttatcgacgcgggtctgatg
ttcccagaagaggaactgctcggtatagacatcgttataccggatatgacctatctgttc
gagaatcgggataaggtaaaggctgttttggtaactcacggccacgaagatcacgtcggg
gccttgccctatctgcttcgcgagatcgacgttccaatttacggcactaagctgaccata
ggaattatcgaggcaaagctgcgggaacatggcttgacgggtgcccggcttaacatcgtc
aaacccagggataaaataaatgtcggaccgttagaagcggaattcatccgggtaagtcat
agtatacctgatactttggccatcgccatccattctccggttggaaccatcttgcacacc
ggggatttcaaactggatcaaaccccggttgacggagaggttgtggacttccgaaagttc
gcggaactcggagaaaagggcgtactgctgatgttgtcggacagcaccaacgcggaaagg
ccgggttatacgatgtcggagcgggtggttgggaacaccttcgatgagctcttcgggcgg
tgtgaaggcaggatcataataaccacctttgcttccaacgtgcaccgcattcaacaagca
attaatacggcctgcaagtacaaccgtaaggtggcggtggtcgggcggagtatgataaat
aacgtgaatatcgctcgagagctcggatacatcgctattcctgaaggaacgctggttgat
gtggaattgatcaaccggtacccggacaaccagttggtgattgttactacaggctcgcaa
ggagagcctatgtcggcacttaccaggatggcgacggctgagcaccgttgggtttcgatt
cagccaggggacacggtaatcatttctgctacgcccatacccggcaacgagaaactagtg
gctcggactatcgacatgctgtacaaacagggggcagaggttgtctacggaccggctacc
ggggtccatgtttccggacacgccagtcaagaagagctaaagataatggtaaacttgata
aggccccgctacttcatacctattcacggcgaatacaggcatctgaagaagcacgcgcgg
ttggcggaaaacctgggtattccccggtccaggatattcgtagtagaaaacggtcaggtg
atagaggtagggaggaaaaaggcgggggtgatagggaaagtcacttcgggaagggtgctg
gttgacggtctaggagttggagatgtcggaaacatcgtgcttcgcgaccgcaagcagctt
tcctctgatgggatcatcatagtggtagtgactataaacaaagaaacaggaacagtcata
gcaggaccggacatcgtcagtcggggatttgtttacgtgagggaatctgaacagttgatc
gaggaagccagagaaaaagtcagagaggctttgctcgtgtgtgagaagaagggcgcaacc
gaatgggccagtatcaagtctcacgtcagggaagccttgagcaaatatctgtacgaaaag
accaaacgaaggcccatgatactgccgataattatggaggtttaa
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