Syntrophothermus lipocalidus: Slip_1051
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Entry
Slip_1051 CDS
T01253
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
slp
Syntrophothermus lipocalidus
Pathway
slp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Slip_1051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slp03019
]
Slip_1051
Messenger RNA biogenesis [BR:
slp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Slip_1051
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF5662
Propep_M14
Motif
Other DBs
NCBI-ProteinID:
ADI01830
UniProt:
D7CM95
LinkDB
All DBs
Position
1083264..1084811
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AA seq
515 aa
AA seq
DB search
MTGIQFTSIIIAVVALIAGIGAGYVLRRNVAESKLGAAEEEAKRILEEAIKEAEAKRKEI
LLEAKDEIHRARQEAERDNRERRRELDRIERRIIQKEETLDKKLENIEQKEQMLREKEID
IEKTQADLQVILSQQLKELERLSGLSSEQAKELLLRNVEEQIRQETAALIREVEAEAREE
AEKRARDVVTLAIQKCAADVAAETTVSVVALPNDEMKGRIIGREGRNIRTFETLTGVDLI
IDDTPEAVILSSFDPIRREIARVALEKLIADGRIHPARIEEMVEKATKEIEQEIREVGEQ
AAFEVGVHGLHPEIIRLLGRLKYRTSYGQNVLKHSIEVAHLAGVMAAELEVDAVLAKRAG
LIHDIGKAVDHEVSGSHIEIGVELAKRYRESKEVLHAIAAHHGDIEPETIEAVLVQAADA
ISASRPGARRETLEAYIKRLEKLEKLADSFSGVERAYAIQAGREVRIMVKPEEIDDLASI
NLSREIARKVEQDLDYPGQIKVVVIRETRAVDYAK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
gtgacagggattcaatttacttccatcataattgcggtagtagcgttgatagctggaatc
ggagcaggatacgttctaagaagaaatgtagctgaaagtaagctcggtgctgcggaagaa
gaagccaagcggatactggaagaagcgataaaggaagctgaagcgaagcggaaagaaata
ttgttagaagcaaaggacgaaattcaccgggcaaggcaggaagcagagagggacaaccgg
gagcgaaggcgtgaactcgaccgaatagaacggaggataattcagaaagaagaaacactt
gacaagaaattggagaatatcgagcagaaggagcagatgcttcgcgaaaaggagatcgat
atcgaaaagacccaggcagacttgcaggtgattttgagccagcagctgaaagagctggaa
cggctttcagggttatcctcggagcaggctaaggagcttttactccgcaacgtagaggaa
cagataaggcaggagactgctgccctgatcagggaagtggaagccgaggctcgagaggaa
gcggagaaaagagctcgggatgttgtaacccttgctatacagaagtgcgcggctgacgta
gctgctgaaacaactgtatcggtggttgcgcttcccaacgacgagatgaaggggcgtatt
atcggacgagaagggcgcaatatccgtaccttcgagacccttaccggggtagatctgata
atagatgacacccccgaggccgtaatcctgtcttcttttgacccgattcgcagggagata
gcgcgggtagctttagaaaagcttatcgcggatggcagaattcatcccgcgcgaatcgaa
gagatggtagaaaaggcgactaaggagatcgagcaggagattcgagaagtaggagaacaa
gcggcatttgaagtcggtgttcacggtttgcaccccgagataattagactgctgggcaga
cttaagtacaggacgagttacggtcagaacgtactcaaacactcgattgaagtagcgcat
ttggctggagtcatggcagcggagttggaagtggacgcggttttggctaagagggcaggc
ctgatccacgatataggcaaagcggtcgaccacgaagtgagtggttctcatatcgaaatc
ggtgtggaactggccaagaggtatcgagaaagtaaagaggtacttcatgccattgcagct
catcacggcgacatcgagcctgaaaccatcgaagcggttttggttcaggccgcagacgcc
atatcggcttcacgaccaggcgcacgccgcgagaccttggaggcttatatcaagcggctg
gagaagttagagaagctggcagattctttttctggggtcgagagagcctatgccatccag
gcgggtcgtgaggtgcgtataatggtgaagccggaggaaatcgatgacctggcttctata
aacctttctcgggaaatagcgaggaaggtagagcaggatctcgattaccctgggcagata
aaggttgtagtcatacgggaaaccagagcggtggattacgccaaataa
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