Syntrophothermus lipocalidus: Slip_1071
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Entry
Slip_1071 CDS
T01253
Name
(GenBank) RNA modification enzyme, MiaB family
KO
K06168
tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:
2.8.4.3
]
Organism
slp
Syntrophothermus lipocalidus
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slp03016
]
Slip_1071
Enzymes [BR:
slp01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.3 tRNA-2-methylthio-N6-dimethylallyladenosine synthase
Slip_1071
Transfer RNA biogenesis [BR:
slp03016
]
Prokaryotic type
tRNA modification factors
Methylthiotransferases
Slip_1071
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM
TRAM_2
Colicin_Ia
Motif
Other DBs
NCBI-ProteinID:
ADI01849
UniProt:
D7CMB4
LinkDB
All DBs
Position
1101926..1103269
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AA seq
447 aa
AA seq
DB search
MRTKEDIRKKYSILTYGCQMNERDTETIAGLLEKSGYVEAASPEEANLIIFNTCSVRTSA
ENKVYGKLGEIKRLKKARPDLLVGFGGCMAQMEEVRKKLGEGGVVDIIFGTHNLHELPRL
VEKAEAGVERPVIDVWPEAGDIVEGLPARRTGGVSAFVNIMFGCNNFCSYCIVPFTRGRE
RSRKPSDIIDEVKDLVQQGVKEVTLLGQNVNSYGKGLEPETDFASLLELVNEIPGLERIR
FTTSHPRDVSERLLSTIASCRKVCEHIHAPLQAGSNRILKAMNRGYTREYYLDLVHKMRE
IVPGVAVTTDLIVGFPGESDRDFEDTIDMVKRIRFDAAFTFMYSPRSGTKAARLSDQVPL
EVKKERLLQLNEIQYNIALEANRRFEGKDVEVLVEGPSKTNPRKLTGRTRTNRIVVFEGK
PDLAGRLVMVRVREAKTFTLLGEAVEG
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
gtgaggactaaagaagacataagaaaaaaatacagtatattaacttatggctgccagatg
aacgagcgcgataccgaaaccatcgccgggcttctggaaaagagcggttatgtggaggcg
gccagtccggaagaagcgaatttgattatttttaacacctgtagcgtgagaacctcggcg
gaaaacaaggtttacgggaaactgggagaaatcaaacgactcaagaaggcgaggccagat
ctcttggttggattcggcgggtgcatggcccaaatggaagaggtcagaaaaaagctgggc
gagggaggggtagtggatatcatcttcgggacccacaacctgcacgaactcccgagactg
gtagaaaaggccgaagccggcgtggagaggccagttatcgatgtctggcccgaggcgggg
gacatcgttgagggactcccggcccgacgtaccggcggggtcagcgcctttgtcaacatt
atgttcgggtgtaacaacttttgttcatattgcatagttccgtttacccggggaagggaa
aggagcagaaagccgtctgatattatcgatgaggttaaggatctggtccaacagggagtg
aaggaggttaccctcctggggcagaatgtcaactcttacggtaagggactggagcctgaa
accgactttgcttccttgctcgagttggtcaatgagataccagggctagagcggattcgt
tttaccacctcgcatccccgcgatgtctcggaacgtctgctcagtactatagcctcctgc
agaaaggtttgtgaacacatccatgcccctttacaggcaggcagcaaccggatactgaag
gctatgaaccgcgggtatacgcgggagtattacttggatctggtgcacaagatgcgggaa
atagtccctggggtggcggtgaccaccgatctcatcgtgggatttccgggagaatcagac
cgtgattttgaagataccatcgatatggtcaagagaattaggttcgatgcggcgtttact
ttcatgtattcgccccgttcgggtaccaaagcggctcgactttcggatcaggttccattg
gaggttaagaaagaaaggctgttgcagcttaatgaaattcagtataacatagctctcgag
gcaaaccggcgattcgaaggcaaagatgtcgaagttttagtggaaggccccagcaagact
aatccccgcaagctgaccggaaggactcggaccaaccgtatcgtcgtgtttgaaggaaag
ccggatctggctggccgattggtcatggtgagggtgcgcgaggccaagacctttaccctt
ttgggggaagcggtcgaaggctag
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