Syntrophothermus lipocalidus: Slip_1694
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Entry
Slip_1694 CDS
T01253
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
slp
Syntrophothermus lipocalidus
Pathway
slp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Slip_1694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slp03400
]
Slip_1694
Enzymes [BR:
slp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Slip_1694
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Slip_1694
DNA repair and recombination proteins [BR:
slp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Slip_1694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Ribosomal_S13
NFACT_N
zinc-ribbons_6
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ADI02452
UniProt:
D7CP17
LinkDB
All DBs
Position
complement(1764049..1764852)
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AA seq
267 aa
AA seq
DB search
MPELPEVETIKRSLAPIVGKTVTGLMVLRSDIVKRCDFGVKNAVGSEIIDVTRRGKYLVI
KLSCARHLVVHLGMTGRLLMVASSEPIAAHTHMVINLEGEKDVRYQDPRRFGNISFVKDT
GGFFSSLGPEPLDPSFGPEELARRLKRRSASIKPVLLDQGVVAGIGNIYADEILFAAGLH
PARGASELNEYEISRLHAAIKEVITRAIECRGTTFRDYRDGFNQPGQFQTHLAVYGRYGQ
PCPKCGQPVQKTVIGGRTTHYCAICQE
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgcctgaggtcgaaaccatcaaaagatcgcttgcgcccatagttggcaag
acggtcaccggtttgatggtgttgagatcggacatagtgaaacgatgcgatttcggggtc
aaaaatgctgtcggttccgagatcatcgatgttacccgccggggcaagtacctggtaata
aagttaagctgtgcccgccacttggtggtgcacctgggaatgaccgggcgcttattgatg
gtggcgagcagcgagccaatagcagctcacacccacatggtcataaatctagaaggggaa
aaagacgtgcgttaccaagaccctaggcgctttggcaacattagttttgtaaaggataca
ggaggttttttttcttccttgggacctgaacctctagacccgtcatttggaccagaagaa
ctggctcgccggctaaagcggcggtccgcttccatcaagccggttctgctggaccaaggg
gtagtagctggcatcggcaatatctacgccgacgaaatcctttttgccgccggccttcat
ccagctcggggggcttccgagttaaacgagtatgagatcagccgtcttcatgccgcgata
aaggaggtaataacccgggctatcgaatgccgggggacgactttccgcgattaccgcgat
gggttcaatcagcccgggcagtttcagactcatttggcggtgtatggccgatacggtcaa
ccctgtcccaaatgcggccagcctgtgcaaaagaccgtgatcggaggccgtaccacccat
tactgtgcgatatgccaagagtag
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integrated database retrieval system
