Syntrophothermus lipocalidus: Slip_1842
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Entry
Slip_1842 CDS
T01253
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
slp
Syntrophothermus lipocalidus
Pathway
slp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Slip_1842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slp03019
]
Slip_1842
03016 Transfer RNA biogenesis [BR:
slp03016
]
Slip_1842
Enzymes [BR:
slp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Slip_1842
Messenger RNA biogenesis [BR:
slp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Slip_1842
Transfer RNA biogenesis [BR:
slp03016
]
Prokaryotic type
tRNA degradation factors
Slip_1842
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_PDCD11
S1_RRP5
RNase_II_C_S1
OB_HELZ2
DUF1918
BSD
AbiEi_4
Motif
Other DBs
NCBI-ProteinID:
ADI02597
UniProt:
D7CPG2
LinkDB
All DBs
Position
complement(1894828..1896939)
Genome browser
AA seq
703 aa
AA seq
DB search
MITRDEIIAYMEQKSYRPLGYLELKEALNVSEEDETAFARLLGRMEKEGDIVQTRKGKYG
LPRMMNLVRGVISISPRGFGILRPDEHTEGEIFVYGRDLNGAMHHDRVMVRINRTGAGGQ
RPEGEVIRALERAHRQVVGTFRKLRPLPQVIPDDPRLLYPVYVKPKTKMRVNDGDKVLVE
ITVWPDKDRYPEGRIIEVLGGKGEPGLDVLCIIRKFQLRDEFPSQVVKEARRVAVLPGED
ELAQRRDLREWKMVTIDGEDAKDLDDAVSIERTQGGYRLGVHIADVSHYVSEGGVLDKEA
FRRGTSVYLTDRVLPMLPPELSNGICSLNAGEDRLAVSVVMDIDEKGEVRNYEIFKSVIR
VKERMTYTDVNKILLENDPDLRTRYSELVPDFEVMGELCRILRKRRMDKGALDFDFPETK
IIVDEKGWPVAVARMERQLAEMIIEEFMIKANEVVAEHLYSLKVPTLYRVHERPDEDSIR
ELNRVLGVFGHRVAEREVQPKHFQEILEKIKDRPEERTVSTIILRSMRHARYAPQPLGHF
GLASAYYTHFTSPIRRYPDLVVHRVLTYLLEKGAIPAKKRTAWEMKMPLCGEHSTLREIT
AEEAERESADLKKAQYMKQFVGEFFDAVVSSVTSFGLFVELENTVEGLVHVSSMADDYYE
FDDRSFSLTGRHTGKRFRIGDRVRVQLVNVNIDEAKIDFELAG
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
ttgataacccgcgatgagataatcgcctatatggaacagaagagctaccggcccctcggg
tacctggagcttaaggaagccctgaacgtctccgaggaagatgagacggcttttgcccgg
ttgttgggccggatggaaaaggaaggcgatatcgtccagacccggaagggaaagtatgga
ttgccccggatgatgaacctcgttcgaggcgtcatttccattagtcccaggggattcgga
atcctgaggcctgacgaacacaccgaaggagagatattcgtttatggaagggatctcaac
ggggccatgcatcacgaccgggtgatggtgcggattaaccgcacaggagcgggaggtcag
cgcccggaaggcgaagtaattcgggcgctagagagggctcaccggcaggtggtggggacg
ttccgaaaactcaggccgctgccccaggtcatccccgatgatccgcgtttgctctatccg
gtttacgtcaaacccaagactaagatgagggtgaacgatggcgataaggtcctggtagaa
atcacggtttggcccgacaaggaccggtatccggaaggcagaataatcgaggtactgggc
ggtaaaggggaaccaggactggatgtgctgtgcataataagaaaatttcagcttcgagac
gaattcccaagccaggtcgtgaaagaagctcgacgggtagcggttttaccgggcgaagac
gaattagctcagaggcgggatcttcgcgagtggaagatggtgaccattgacggcgaagat
gcaaaggacctcgatgatgcggtttcgattgaaagaacacaagggggttatcgcctcggg
gttcatattgccgatgtttctcattacgtgagcgaaggcggtgttttggataaggaagct
ttcagaagaggaaccagcgtgtaccttacagacagggtcctgcccatgcttcccccagag
ctatcaaacggaatatgcagcctcaacgcgggggaggaccgcctggcagtcagtgtagtt
atggacatagacgaaaaaggagaggtaaggaattacgagattttcaaatctgtcatccgg
gtcaaagagaggatgacctacactgacgtgaacaagatacttctggaaaacgacccggat
cttcggacgcgttactcggaactagtgcctgattttgaagtcatgggggaactctgccgg
atattgcgaaaacgacgcatggacaaaggtgctttggacttcgattttcccgagactaag
ataattgtggacgaaaaagggtggccagtcgccgtggccaggatggagcggcagttggcc
gagatgataatcgaggaattcatgatcaaggccaatgaagtcgtggctgagcacctgtac
agtctgaaagttccaactctttaccgggttcacgaaagaccggacgaggacagcattagg
gaactgaaccgcgtactcggggtgtttggacaccgcgtagcagagcgagaggttcagccg
aagcatttccaggagatacttgaaaagataaaggacaggccggaggagagaacggtcagc
actataatcttgcgttcgatgcggcatgcccggtatgctccgcaacccttaggccatttc
ggcctggcgtctgcatattatacccacttcacttcccccatccggcgttatccggactta
gttgtgcaccgggttctcacttacttgctggaaaagggagcgataccagccaagaaacga
acggcctgggagatgaagatgccgctttgcggcgaacactcgacactgagagagataaca
gccgaagaggcggaacgggaatcggcggacctgaagaaagcccagtacatgaagcagttc
gtaggcgaattcttcgacgctgttgtttcttcggtaacctctttcggccttttcgtggaa
ctggagaacactgttgagggacttgtccacgtgtcgtctatggccgatgattattacgag
ttcgatgaccgcagcttcagtttgacaggcaggcacacgggtaaacggttccgcatcggt
gaccgggtgagggtacaactggtcaacgtgaacatcgacgaagctaagatagactttgaa
cttgcaggctag
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