Syntrophothermus lipocalidus: Slip_2080
Help
Entry
Slip_2080 CDS
T01253
Name
(GenBank) PAS modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
slp
Syntrophothermus lipocalidus
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slp03000
]
Slip_2080
Transcription factors [BR:
slp03000
]
Prokaryotic type
Helix-turn-helix
Other families
Slip_2080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
GAF
PAS
Mg_chelatase
PAS_4
AAA_2
AAA_5
PAS_9
AAA
PAS_8
HTH_50
MCM
HTH_7
AAA_3
AAA_16
nSTAND3
DUF815
IstB_IS21
HTH_22
PAS_7
HTH_23
bpMoxR
Motif
Other DBs
NCBI-ProteinID:
ADI02827
UniProt:
D7CIU9
LinkDB
All DBs
Position
complement(2114839..2116797)
Genome browser
AA seq
652 aa
AA seq
DB search
MHGDKKEMIRIWKVLREKGECEGIIVSQEIRDSWARSRAYGVDPFKRKNHHVLSAEELEK
RRIKNRALLEEATVSMQNLFKFTEGSGFAFTLADGDGYLLKRIGDKWELEFTAGANFSEG
ANWSEQVMGTNAVGLALALGKPVQVFGYEHYCLCATITTCSASPIFDSDGNVIGVLDITG
PFELVNRHTLGMAVAAARSIERQLALYQACQESEMANMYKSIIMDSMSDGVITLDREGKV
THMNGLAARMLGLDPRTALGKRLCSLVPSGNRLFLAKLADNKKLCSEPLILRKTDETVKL
AVSSTPLVNRDDKVLGKVVILQAMQQYRRLIKRVAGARAKITFDDIVGSSSNFKSAVRQA
ERAATSDSHVLLLGESGTGKDLLAQAIHNASSRAGEPFFAINCAALPRELISSELFGYEE
GAFTGARKGGNPGKFELADQGTIFLDEIGEMALDLQASLLRVLEEGNVVRLGGTEVIPVN
VRVIAATNKNLMDEVRKGRFRLDLYYRLGVIVIQIPPLRERKGDIPELVEHFMKTIGPRM
GKKVAGIEDRAMDVLLGYDWPGNVRELSNVIERAISMMLGEVITVDVLPFDIIQSQEGYI
PVWEKTPSRDNVEEQLIRNYLRKFKDNKSRVAKELGISRSSLYRKMQKYSIV
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgcacggggacaaaaaggaaatgattcgtatctggaaggtgttgcgggaaaagggggag
tgtgagggaattatagtatcccaggagatacgggattcctgggccaggagccgggcttat
ggggtagacccgtttaaacgcaagaatcatcatgtccttagtgcagaagagttggagaaa
aggcgcataaaaaaccgggcactactcgaagaggctacggtgagcatgcagaacctgttc
aagttcactgaaggttcagggtttgcttttacactggcggatggagacgggtacctcctc
aaaaggataggcgacaagtgggaactggaattcacagccggggccaactttagcgaagga
gcgaactggtcggagcaagtcatgggtactaatgcagtggggttggcactggccctgggc
aaaccggtgcaggtattcggctacgaacattactgcctgtgtgcgaccataactacctgt
tcggcctcgcccatatttgacagtgatggtaacgttatcggggtgcttgacatcacgggt
ccgtttgagcttgtcaaccgtcatacattgggaatggctgtagccgcagcgaggtctata
gagaggcagcttgccttgtaccaggcttgccaggagagtgagatggccaacatgtacaaa
agcattatcatggactctatgtcggacggagttataaccttggaccgagagggaaaagta
acgcatatgaatggcctggcagcccgaatgttgggcctcgatccccggacggcactgggt
aagaggttgtgctctctagttccatcaggaaacaggctgttcttagccaagttggccgat
aacaaaaaactgtgcagcgaaccgttgattctgcgaaaaacggatgaaacggttaagctg
gcggtcagttctacccccttggtgaatcgcgatgacaaggtacttggtaaggtggttatt
cttcaagccatgcagcagtacaggcgactgataaaacgggtagcaggagcacgggcgaag
atcacgtttgatgacatcgttgggagcagtagcaatttcaaaagtgcggtaaggcaggca
gaaagggcggctacttctgattcacatgtgttgctattaggagaaagcggaacggggaag
gatctgcttgcccaagccattcacaatgcgagtagccgagcgggtgagcccttttttgct
ataaattgtgctgctctacccagagaacttattagcagtgaattgtttggatatgaagaa
ggcgcctttacgggagctcgcaaaggaggcaacccaggcaaatttgaactcgcagaccag
ggtacgatctttttggatgaaattggagaaatggcgctagatcttcaggcatcgttgcta
cgggtgctggaggaaggtaacgttgtccgattggggggaacggaggtaattcctgttaac
gtgcgggtaattgcagccactaataaaaatctcatggatgaggtaaggaaaggccgcttt
cgactggatctttactatcgccttggcgtaattgttatacagatacctccgttgagagaa
agaaaaggagatatcccggaacttgtcgagcattttatgaagaccataggtccgaggatg
ggaaagaaagttgccggaattgaggacagagctatggatgtgcttctagggtatgattgg
cctggtaacgtcagggaactgagcaatgtaatagaacgggcaattagtatgatgcttgga
gaggtaataacagtagatgttctgcccttcgatataatccaaagccaagaagggtatatt
cctgtatgggaaaagacgccttcccgggataacgtagaagagcaactcataagaaactac
ctgcggaagtttaaagataataagagtcgtgtcgccaaagaacttgggatatcgaggagt
agcctgtatcgaaaaatgcaaaagtacagtattgtatga
DBGET
integrated database retrieval system
