Syntrophothermus lipocalidus: Slip_2244
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Entry
Slip_2244 CDS
T01253
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
slp
Syntrophothermus lipocalidus
Pathway
slp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Slip_2244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slp03021
]
Slip_2244
03400 DNA repair and recombination proteins [BR:
slp03400
]
Slip_2244
Enzymes [BR:
slp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Slip_2244
Transcription machinery [BR:
slp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Slip_2244
DNA repair and recombination proteins [BR:
slp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Slip_2244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ADI02985
UniProt:
D7CJN0
LinkDB
All DBs
Position
complement(2265882..2269340)
Genome browser
AA seq
1152 aa
AA seq
DB search
MLDVNNFERIRISLASPEKIRSWSSGEVKKPETINYRTLRPEKEGLFCEKIFGPVKDWEC
HCGKYKRVRHKGIVCDRCGVEVTTSKVRRERLGHIELAAPVSHIWYLKGIPSRMGLLLDL
SPKVLEKVIYFVNYIVLDPGDTPLLRKQLLNEREYRELKEKYEGKFRVGIGAEAVKELLE
AIDLEELSRELKEEISISTGQRRSRAIKRLEVVEAFRMSGNRPEWMILEVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRAVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMHQCGLPKE
MALELFKPFVMKKLVDKGMASNIKSAKKMVERGKDEVWDILDDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRALQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLSSGNIL
NPKDGRPVVTPTQDVVIGCYYLTLSREGEKGEGRHFSSPEEARMAYEMGHISLHANIYVR
MKNGEKIKTTVGRIIFNETIPEELGYLNQVVGKKELGDLVYNCYRKLGNDVTARMLDGIK
SVGYTFATRAGITVGVTDFQTPDAKAEILREADQKVSEIEENYQAGLITAEERHSLVVDV
WNEATDRVTEALKQQLDEDNPVYMMAISGARGNFQQIRQLAGMRGLMADPSGKIIDLPIK
ANFREGLTVLEYFTSTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTHEGI
VVSEITEGTEVIEKLEERIIGRVAVDDIVDPQTGEILVQENQEIDEEAAERIIKAGITSV
KIRSALTCKTRHGVCQKCYGRNLATGYQVEIGEAVGILAAQSIGEPGTQLTMRTFHTGGV
AGDDITRGLPRVEELFEARKPKGQAVVTEVSGSVRIVDNKGRREVQIVNAEGEVLAAYQA
HYGSRLKVQDGDIVEPGDELTEGPLNPHDILRTKGLRAVQAYLLHEVQKVYRLQGVDISD
KHIEIMIRQMLKKVKVEEAGDTNLLPGAYVDISDFEEENRRVFEKNKGLPAVAKPMLLGI
TKASLNTDSFLSAASFQETTKVLTEAAIKGKVDSLIGLKENVIIGKLIPAGTGYAKYRNL
VVEDAEQTESGN
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
ttgctggatgttaacaattttgagcgtatccggatatcactggcttcccccgaaaaaatc
cgttcctggagcagcggcgaagtaaagaaaccagaaactataaactaccgtaccttgagg
ccggaaaaagaaggtctgttttgtgagaaaatattcggaccggtgaaggactgggagtgc
cattgcggcaaatacaagagagtcagacacaaaggtatcgtgtgtgaccgttgcggggta
gaagtgactacttcgaaagtcaggcgcgaacgtctgggacatatcgaactggcagctccg
gtgtcccatatctggtaccttaaaggcatacccagccgtatgggtcttttgctagatttg
tcccccaaggtgttggaaaaagtcatctatttcgtaaactatattgttctggacccgggg
gacacgccgcttttgcgaaaacagcttttgaacgagcgggagtaccgcgagctcaaagaa
aagtacgagggcaagttcagggttggtataggagctgaggcagtcaaagagttgttggaa
gctattgaccttgaggaactgtcgagagaactcaaagaagagataagcatttccaccggg
caaagacggagcagggccattaagcgcctggaagtagttgaggcttttcgcatgtcgggc
aatcgcccggaatggatgatactggaggtgttgccggttattccacccgagcttcggcca
atggtgcagctggacgggggtaggtttgctacttccgacctaaacgacttgtaccggcgg
gttatcaaccgcaataaccggctcaagcggttgctggacttgggagcacccgacatcata
gtgcgcaatgaaaagcggatgttgcaggaagcggtagacgcgctcatcgacaacgggcgc
cggggaagggctgtaaccggcccgggcaaccgtcctctaaaatcgctgagcgatatgcta
aaaggtaagcaggggcgtttcaggcagaacctgttgggcaagagggtggactactccggt
cgttcggtcatcgtggtgggaccgaatctcaagatgcaccagtgcgggttgccgaaagag
atggccttggaattgttcaaaccttttgtaatgaaaaaactggtagacaagggtatggcc
tccaacattaagagcgcgaagaagatggttgagagaggaaaggacgaggtatgggacatt
ctggacgacgttattaaggaacaccccgtactattgaaccgggctcctactcttcaccgt
ctcggcattcaagcttttgaaccggtgctggtggaaggacgggctctgcagatacacccg
ttggtttgtacggcctataacgccgactttgacggtgaccagatggcggttcacgtgcct
ttgtcagccgaagctcaggccgaggcgaggttgctcatgctttctagcggtaacatcctt
aaccccaaggacggccgtccggtcgttactcccacccaggacgtggtcatcgggtgttat
tacttgaccttgagccgggagggagaaaaaggagaaggtcgccatttctcttcaccggaa
gaggcaagaatggcttatgaaatgggacacataagcctgcacgctaatatctacgtcagg
atgaagaacggggaaaagataaagactacggttggcaggataatattcaacgagactatc
cccgaagaacttggctatttgaaccaagtggtgggtaagaaagagctcggggacctggtt
tacaattgctatcgtaagctaggcaacgacgttacggctcgaatgctagacggaataaag
tcggttggatatacgtttgccacacgggccggcattactgtgggtgttaccgattttcag
acgccagatgccaaggcggagatattgagagaagctgatcagaaggtcagtgagatagaa
gaaaactaccaggctggtctaataaccgcggaggaaaggcattccttggtggtcgacgtc
tggaacgaagcgacagaccgggttacagaagctctcaaacaacaattagatgaggataat
ccggtgtatatgatggccatttccggagcccgcggtaatttccagcagatacgacaattg
gcgggaatgcggggcctgatggcggatccttcgggcaagatcatcgaccttccgataaaa
gctaacttccgggaaggactgaccgtactcgagtacttcacctcaacccacggggcgaga
aaaggcttggctgacaccgccttgcgtacagctgactccggttacctgacccgaaggtta
gttgacgtttctcaagacgtgatcatcagagaggaagattgcggtacccacgaaggtatc
gtggtttcagagattacggaagggaccgaagtaatagaaaaactggaagaaaggataatc
ggccgagtagcagtagacgatatcgtcgatccgcaaaccggcgagattctagttcaagag
aatcaggaaattgacgaagaggcagccgagcgaataatcaaggcgggcattaccagcgtg
aaaatcaggtctgctttaacctgcaagactaggcacggggtgtgtcagaagtgttacggg
cgtaatctagctaccggctaccaggtcgagatcggagaagcagtcgggattttagcagcc
caatccatcggagagccggggacgcagctgacgatgcgcactttccacaccggaggggta
gcgggggatgacattacccgcggtttgcctcgggtagaagagttgtttgaggctagaaaa
cctaaagggcaggcggttgttaccgaggtttccggttcggtaagaatcgtggacaacaaa
ggacggagagaggtacaaatcgtcaacgctgagggtgaagtcttagcagcttaccaggcc
cattacggttcccgtttgaaggttcaagacggcgacatagtggaacccggagacgaattg
accgaggggcctcttaacccccacgatattttgcggaccaaagggttaagggcagtgcag
gcctatctcttgcacgaggtccaaaaggtctaccgtctacaaggggtggacataagcgat
aagcatatagaaataatgatcaggcaaatgctaaagaaggttaaagttgaagaagccggt
gatactaacctgctgcccggggcttacgtggacatttctgattttgaagaggagaaccgt
cgggtgtttgagaaaaacaagggtctccctgccgtggctaaacctatgcttttaggtatt
accaaggcttctcttaatacggattcttttttgtcggctgcttctttccaggagacgacc
aaggttttgaccgaagctgcaatcaagggtaaggtagacagcttgatcggtttgaaggaa
aacgtgatcataggcaagcttattccggccggaaccgggtacgccaaataccgcaatctt
gtagtagaggatgcagagcaaaccgagtccggcaattga
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