Serratia liquefaciens: M495_01810
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Entry
M495_01810 CDS
T02740
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
slq
Serratia liquefaciens
Pathway
slq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M495_01810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slq03019
]
M495_01810
03009 Ribosome biogenesis [BR:
slq03009
]
M495_01810
Enzymes [BR:
slq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M495_01810
Messenger RNA biogenesis [BR:
slq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M495_01810
Ribosome biogenesis [BR:
slq03009
]
Prokaryotic type
rRNA helicases
M495_01810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
UTP25_NTPase-like
Cas3-like_C_2
DRTGG
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AGQ29214
LinkDB
All DBs
Position
392933..394900
Genome browser
AA seq
655 aa
AA seq
DB search
MTTELETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNLDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTVHGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDMYRALLAKLQPEEELEME
TLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRGSDRRRDARPDSRDGGADRPRR
ERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAGHSTIELPKGMP
GEILSHFTRTRILNKPMNMQLLGDAQPHERRERREGGAGAGNGERRGGGRPFNGERREGA
NPGRRSFGDRREGGAAAPAGNGGERRGGNFNRDGQRAPRRDDAAPAAPRRRFGDA
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgacctggggctgtctgctccgatcatttct
gccctgaccgatctgggctatgaaaaaccttcaccgatccaggctgagtgtattcctcac
ctgttgaacggccgtgatgtgctgggcatggcacagaccggtagtggtaaaactgcagca
ttctcgctgccactgctgcacaaccttgacgcttccctgaaagcacctcagatcctggtg
ctggcaccgacccgcgaactggcggttcaggttgctgaagcgatgactgatttctccaaa
cacatgcatggcgttaacgtcgtggccctgtatggcggccagcgttatgacgtgcagctg
cgcgctctgcgtcagggcccgcaaatcgtagtagggactccaggccgtctgctggaccac
ctgaagcgtggtaccctgaacctctctaacctgagcggtctggtgctggatgaagccgac
gaaatgctgcgcatgggctttatcgaagacgtagaaaccatcatggcagagatcccggct
gaacatcagaccgcgctgttctccgcaaccatgccggaagcgatccgtcgcattacccgc
cgcttcatgaaagagccgcaggaagtgcgcatccaatccagcattactacccgtccggac
atcagccagagctactggactgtgcacggcatgcgtaaaaacgaagcgctggtgcgtttc
ctggaagcggaagactttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctg
gaagtggctgaagcgctggagcgcagcggttacagcagcgcagcactgaacggcgacatg
aaccaggcactgcgtgagcagaccctggagcgcctgaaagatggtcgtctggatatcctg
atcgcaaccgacgttgctgctcgtggcctggacgttgagcgtatcagcctggtggtaaac
tatgatatccctatggattcagagtcttacgttcaccgtatcggccgtaccggccgtgct
ggtcgtgccggccgtgcgctgctgttcgtagaaaaccgcgaacgccgcctgctgcgcaac
atcgaacgcaccatgaagctgaccattccagaagttgagctgccaaacgcagaactgctg
ggtgagcgtcgtctggccaagttcgccgctaaagtacagcaacagctggaaagcagcgat
ctggacatgtaccgcgcactgctggctaaactgcagccggaagaagagctggaaatggaa
accctggccgcagcactgctgaaaatggcacagggcgaacgtcctctgatcttgccaccg
gatcccgtgttcaaaccacgtcagcgtcgtgaattcaacgaccgtgacgatcgcggtagc
gaccgtcgtcgtgacgcacgtccagacagccgtgatggtggcgcagatcgcccacgtcgc
gagcgtcgtgacgttggcgaaatgcagctgtaccgcattgaagtgggccgtgatgacggc
gttgaagttcgtcatatcgttggcgcgatcgctaacgaaggtgacatcagcagccgttac
atcggtaacatcaagctgtttgctggtcactcgaccatcgaactgccaaaaggcatgccg
ggcgagatcctgtctcacttcacccgtactcgtatcctgaacaagccgatgaacatgcaa
ctgctgggcgatgcacagccgcatgaacgtcgtgagcgtcgcgaaggcggtgctggtgca
ggtaacggcgagcgtcgtggcggtggtcgtccattcaacggcgaacgtcgtgaaggggca
aacccaggccgtcgttctttcggtgatcgtcgtgaaggcggtgctgctgcacctgccggc
aacggtggcgaacgtcgtggcggtaacttcaaccgtgacggccaacgcgccccacgtcgt
gatgacgccgctccggctgcgccacgtcgccgtttcggtgatgcataa
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