Serratia liquefaciens: M495_13170
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Entry
M495_13170 CDS
T02740
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
slq
Serratia liquefaciens
Brite
KEGG Orthology (KO) [BR:
slq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slq03016
]
M495_13170
Enzymes [BR:
slq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M495_13170
Transfer RNA biogenesis [BR:
slq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
M495_13170
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
AGQ31379
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All DBs
Position
2777112..2779046
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRV
TATLHTEKEREIAEPETLIEPFLSRFVGRVQKRDDRLSIVPDHPLLKDAIPCRPVRELKH
NFQAGDWAVAEMCRHPLKGDRGFNADLTQFITDGEDHLAPWWVTLARHSLEKEAPEMIAI
DEPDASVPREDLTALNFVTIDSASTEDMDDALFVQDNGDGSLQLTIAIADPTAYVAQGSA
LDEIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNQRRPVLACRVTIGADGALGDDIRF
FGAEIESKAKLVYDEVSDWLEGIAGWQPPSDEIAQQITLLKRVCDARNAWRHQHALVFKD
RPDYRFVLGEKGEVLEIITEQRRTANRIVEECMIASNVCAAIVLRDRLGFGIYNVHTGFD
PLLVEQAVTVLQANGVEAEAEKLLTLEGFCELRRHLDSQPTQFLDSRIRRSQTYAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITGQSAEKPLDEVTIQLAERRRLNRM
AERDVGDWLYARYLKDKAGTDERFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MVCSQDTGTVQIKGEVVYRQGDTLQVSIAEVRMETRSVIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcagaccccg
cgcgttgaaggcgtagtaaaagggactgagaaaggctttggctttcttgaggtcgacggt
caaaaaagctatttcattccgccaccgtacatgaagaaagtcatgcacggggaccgagtg
accgcaaccctgcataccgagaaagaacgtgaaatcgccgagccggaaaccctgatcgag
cccttcctgtcgcgctttgtcggccgtgtgcaaaagcgtgatgaccgtctgtccatcgta
cccgatcatccgttgctgaaagacgcgatcccttgccgtccggtgcgtgaactgaaacat
aacttccaggccggtgactgggcggtagcggaaatgtgccgccacccgctgaaaggcgat
cgtggcttcaacgccgacctgacccaatttattaccgacggcgaagatcacctggcgccg
tggtgggtcacgctggcccgtcacagcctggaaaaagaagcgcctgagatgatcgcgatc
gatgagccggatgcttccgtgccgcgtgaagatctgaccgctctgaattttgtcaccatc
gacagcgccagcaccgaagatatggacgatgcgctgtttgtgcaggacaacggcgacggc
tcgctgcaattgaccatcgccattgccgatccgaccgcctacgtcgcgcaaggcagcgcg
ctggatgaaatcgcccgcaagcgcgcctttaccaactacctgccaggtttcaacatccct
atgttgccgcgcgatctgtcagacaacctgtgttcactgcgcccgaaccaacgccgtccg
gtgctggcttgccgcgtgaccatcggtgcagacggcgcattgggtgacgatattcgcttc
ttcggcgccgagatcgaatcaaaagccaaactggtttatgacgaagtctccgactggctg
gaaggcattgccggctggcagccgccgagcgatgaaatcgcacagcaaatcaccctgctc
aagcgcgtgtgcgatgcacgtaacgcctggcgccaccagcatgctctggtattcaaagat
cgcccagactaccgctttgtgctgggtgaaaaaggcgaagtgctggagatcatcaccgaa
cagcgccgcaccgccaaccgcatcgtcgaagagtgcatgattgcttccaacgtctgcgcc
gccattgtgctgcgcgaccgtctgggctttggcatttacaacgtgcacaccggtttcgat
ccgctgctggttgagcaagccgtaaccgtactgcaagccaacggcgttgaagccgaagcc
gagaagctgctgacgctggaaggtttctgcgaactgcgtcgtcacctcgattcgcaaccg
acccagttcctcgacagccgtattcgccgctctcagacgtatgccgaaatcagcactacg
ccggggccgcacttcggtctgggcctggaggcttacgccacctggacctctccgatccgt
aaatacggtgatatggtcaaccaccgcttgctgaaagccgttatcaccgggcagtccgca
gagaaaccgctggacgaagtgacaatccaactggccgaacgtcgtcgtctgaaccggatg
gcggaacgtgacgtcggcgattggctctacgcgcgttacctcaaggataaagcaggcacc
gatgaacgcttcaacgcggaaatcatcgacgtaacccgcggcggcctgcgcgttcgtctg
ctggacaatggcgcagtggcctttatcccggcgcccttcattcacgcggtacgtgatgaa
atggtatgcagccaggataccggcacggtgcagatcaaaggcgaagtcgtttatcgtcag
ggggataccctgcaggtatccatcgccgaagtgcgtatggaaacccgcagcgtgatcgcc
agaccggcggcttaa
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