Serratia liquefaciens: M495_19675
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Entry
M495_19675 CDS
T02740
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
slq
Serratia liquefaciens
Pathway
slq03030
DNA replication
slq03430
Mismatch repair
slq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M495_19675 (dnaE)
03430 Mismatch repair
M495_19675 (dnaE)
03440 Homologous recombination
M495_19675 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slq03032
]
M495_19675 (dnaE)
03400 DNA repair and recombination proteins [BR:
slq03400
]
M495_19675 (dnaE)
Enzymes [BR:
slq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M495_19675 (dnaE)
DNA replication proteins [BR:
slq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M495_19675 (dnaE)
DNA repair and recombination proteins [BR:
slq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M495_19675 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AGQ32574
LinkDB
All DBs
Position
complement(4105751..4109239)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSEVLGDELAQLTVLAANNEGYQNLTLLISRAYQRGYGAAGPTIDRDW
LIEHREGLILLSGARQGDVGKFLLRGNQPQVEQCLEFYQQYFPDSYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYTAQQYM
RNEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLILKSKEGL
EDRLEFLFPDPEVRAQRRPEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNNVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAD
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGQHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKTGLEPIDIAAIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKARGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVNDEGEIVYGIGAIKG
VGEGPIEAILEARNSGEQGYFKDLFDLCARSDIKKINRRILEKLIMSGAFDRLGPHRAAL
MNSLPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPRWQEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIASRVMVTKRGNRIGICT
LDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTARELMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVELEFD
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcacctgcgcgttcatagcgactactccatgatagatgga
ttggccaagattgggccgttggtgaagagagccgccgcgttagccatgcctgctttggca
attaccgactttaccaacctgtgtggtctggtgaagttttatggcagcgcgcacggcgcc
gggatcaaaccgatcatcggcgcggattttcatgtgcaaagcgaagtgctgggcgatgag
ctggcgcagctcaccgtgctggccgccaataatgaaggttaccaaaacctgacgttgctg
atttcccgcgcttatcagcgtggttacggtgccgccggtccgactattgatcgggactgg
ttgattgagcaccgtgaagggctgattttgctctctggcgcgcgccagggggacgtcggc
aagtttctgctgcgcggcaaccagccgcaggtggagcagtgcctggagttctatcagcaa
tacttccctgacagctattacctcgaactgatccgtaccggtcggccggacgaagaaaac
tatctgcacgccgcagtggcgctggccactgaacgcggattgccggtggtggccactaac
gacgtgcgctttctggtcgaggatgactttgacgcccacgaaatccgcgtcgccattcat
gacggcttcacgctggacgatcccaagcgcccacgtaactatacggcgcagcaatacatg
cgtaacgaagacgagatgtgcgagctgtttgccgacatcccggaagcgttgctcaacagc
gtagagatcgccaagcgttgtaacgtgactattcgcctcggcgagtacttcctgccgcag
ttcccgaccggtgatatgagcaccgaggacttcctgatcctcaagtcgaaggaagggctg
gaagatcgcctggagttcctgttcccagacccagaggtgcgcgctcaacgccgccctgaa
tacgatgaacgtctggatattgaactgaacgtgatcaaccagatgggtttcccgggttac
ttcctgatcgtgatggagttcatccagtggtcgaaggataacaacgtgccggttggcccg
gggcgtggttccggtgccggttctttagtagcctatgcactgaaaatcaccgatcttgac
ccgttggaatttgacctgctgtttgaacgcttccttaacccggaacgtgtttcgatgccc
gacttcgacgtcgatttctgcatggaaaaacgcgatctggtgattgagcacgtggcggat
atgtacggccgtgaggcggtatcgcaaatcatcaccttcggtaccatggcggcgaaagcg
gttattcgcgacgtgggtcgcgtgctgggccacccctatggcttcgtcgaccgcatctcc
aaactggtgccgcccgatccgggcatgacgctggaaaaagcctttgccgccgaaccccaa
ctgccggaaatttacgaggccgatgaggaagtcaaagcgctgatcgacatggcgcgcaag
ctggaaggggtcacacgtaacgccggtaagcacgccgggggcgtggtgatcgcgccgacc
aaaatcaccgacttcgcgccgttgtattgtgacgctgaggggcagcatcctgttacccag
ttcgacaagaacgacgtggaatacgccgggctggtgaagttcgacttcctcggcttgcgt
accctgaccatcatcgactgggcgttggaaatgattaacgcccggcgcgccaaaaccggg
ctggagccgattgatatcgccgccatcccgctcgaagacaaaaaaagcttcgacatgctg
cagcgttcggagaccaccgcggtcttccagcttgaatcgcgcggcatgaaggatttgatc
aaacgtctgaagcccgactgtttcgaagacatgatcgcactggtggcgctgttccgccct
ggtcctctgcagtcaggcatggtagacaactttatcgaccgtaagcacggccgcgaagaa
atttcctacccggatatccagtggcagcatgagtcgctcaagccggtgctggagccgacc
tacggcattatcctgtatcaagaacaggttatgcagattgcccaggtactggccgggtat
tcgctgggcggcgcggacatgctgcgccgtgcgatgggtaaaaagaacccggttgaaatg
gccaagcagcgtggcggtttcgaggatggggcaaaagcacgcggcatcgacggcgaactg
tcggtaaaaatcttcgatctggtggagaaattcgccggttatggcttcaacaagtcccac
tccgccgcctatgcgttggtgtcctaccagacgctgtggctgaaggcacactacccggcc
gagtttatggcggcggtaatgaccgccgatatggacaacaccgataaggtggtggggctg
gtggatgagtgctggcgtatggggctgaaaatcctgccgccggacatcaacagcggccag
taccatttccacgttaacgatgaaggcgagatcgtttacggtatcggcgccatcaaaggc
gtcggggaagggccgattgaagccattctggaggcgcgtaacagcggtgaacagggctac
tttaaagacctgttcgatctgtgcgcgcgctctgacatcaaaaaaattaaccgccgcatt
ctggaaaagctgatcatgtccggggcgttcgaccgccttgggccacaccgcgccgcattg
atgaactctttgcccgatgcgttaaaagcggcagatcagcatgccaaagccgaagcgatc
ggccaggtggacatgtttggcgtactggcggaagcgccggagcaagtggagcaatcctac
gccaacgtgccccgctggcaggagcaggtggtgctggacggtgaacgggaaacgttgggg
ttgtacctcaccggccacccaatcacccagtacctgaaggagatcgaacgctacgccggt
ggccagcgtttgaaagatatgcacccgacggatcggggcaaaatgaccaccgccgttggg
ctggtgatcgcctcgcgggttatggtcaccaagcgcggtaaccgcatcgggatctgtact
ctggatgaccgctctggccgtctggaggtgatgttattcaccgatgcgttagaaaaatac
cagcatttattggaaaaagaccgtatcctgatcgccagtggacaggtcagctttgatgac
tttagcggcgggcttaaaatgaccgcccgcgagctaatggatatcagtgaagcccgtgaa
aaatacgctcgcggacttgctatctcgctgacggacaggcaaattgatgaccagcttttg
aaccgtctccgtcagtctttggaaccccatcgctcggggacgattccagtgcatctttac
tatcaacgggaagatgcgcgggccaagctgcgttttggcgcaacctggcgcgtgacgccc
accgaccgcttattgatagatttgcggactttggtaggtaatgagcaggtggaactggaa
tttgactaa
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