Salinispira pacifica: L21SP2_0483
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Entry
L21SP2_0483 CDS
T03013
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
slr
Salinispira pacifica
Pathway
slr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L21SP2_0483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slr03019
]
L21SP2_0483
03016 Transfer RNA biogenesis [BR:
slr03016
]
L21SP2_0483
Enzymes [BR:
slr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L21SP2_0483
Messenger RNA biogenesis [BR:
slr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L21SP2_0483
Transfer RNA biogenesis [BR:
slr03016
]
Prokaryotic type
tRNA degradation factors
L21SP2_0483
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rrp44_S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AHC13915
UniProt:
V5WE48
LinkDB
All DBs
Position
complement(531290..533416)
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AA seq
708 aa
AA seq
DB search
MTNKPKKNTSEQKTGKTPANTQRSKSEQKKTAKDARPEKSRGNRSSAGRSSSGKNSPSRG
SSSRSSSGKPTPAPSGSGSGPRGSNAEGIISLHNRGFGFLIVPEGQDIFIPLDNVGKAMD
GDTVRVRIESRPRGKNPIGRVESILKEGRREFVGLYTRKDGKPRVIPEDDSLTRPIEVKN
PGQARSGQVVVVSRDGTIGEVIGYPDAPGVDVQMVLRSRDLPYEYPAELNRIAQNIPQPN
MRKLKKNRLDFRKQLTFTIDPESAKDFDDAISLKQLPGGMFELAVHIADVSHFVAPGSKI
DEEAAKRSTSIYLLNHVATMLPERLANDLCSLKPGVDRPAFSVIMTVSSRGEVLSYRIQE
SIIKSDRRFTYEQVEEILNGGYDPLGKTIHLLQAVSLLLRRQREETGSIDFNASVPVISL
NEDGTPESIEPSRRLDAHRLVEECMLTANRTVARHIEKIGSLPFVYRIHQRPEAEDARTF
LNLLKAQGINYRIPEDELESEDYRKLLSIIENLEFKDLIEKVALRSMTKAVYSVENQGHF
GLAFDAYTHFTSPIRRYPDLLVHRLLKEYGRTGISLSEAEAKKRKNELQRLCNHASEAES
TATDVEREYIRIKSMQFLKDHLGEDHEGIITGVTSFGLFVQLKDFMIDGLVHISDMKDDH
YIFDGENYQLKGEKRKAVLRLGDPVKVRINRVSVEEQKADFRLIEHPA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacaaacccaaaaagaacacatcagaacagaaaaccggaaaaacaccggcaaac
acccagagatcaaagagcgaacagaaaaagacggccaaggatgcccggcctgaaaaatca
cggggcaaccgcagcagtgcaggccgcagcagttccggcaagaacagtccaagccgcggc
agttcaagcaggagctcttctggaaaaccgactccagccccatccggcagtggatcaggt
ccccggggaagcaatgcagaaggcatcatttcccttcataacaggggtttcgggttcctt
attgtcccggagggtcaggatatctttattcccctggacaatgtggggaaagcaatggac
ggagatacggtgcgtgtccgcatcgagtcccgcccccggggcaagaaccccatcggccgt
gtagagtccatactcaaagagggcaggcgggaatttgtggggctctacacccggaaagac
gggaagcccagggttattcccgaagatgacagtctcacccgccccatcgaagtgaaaaat
ccgggtcaggcccgcagcggccaggtagttgtggtcagccgggacggcaccattggcgaa
gtaatcggatatcccgatgcaccgggggtggatgtccagatggtccttcgttcccgggac
ctgccctatgagtatccggccgaactgaaccgcatagctcagaacattccccagcccaat
atgcgcaagctgaagaaaaaccggctggatttccggaaacagctgacattcaccatcgac
ccggaaagtgcaaaagattttgatgatgccatttcattgaagcagcttcccgggggaatg
tttgaactggcggtacacatagccgacgtaagccactttgtagctcccggaagcaaaatt
gatgaagaagccgctaaacgcagcaccagcatatatctgctgaaccatgtggccaccatg
cttcctgagcgtctggccaatgatttatgcagtctgaaacccggtgttgaccgtccggca
ttcagtgtgatcatgacggtgagcagcagaggcgaggtcctgagctaccgcattcaggaa
agcatcatcaaaagcgatcgccgcttcacctacgagcaggttgaggaaatcctgaacggc
ggatatgaccctctggggaaaaccattcatcttctgcaggcagtaagtcttctgctgcgc
aggcagagggaagaaaccggaagcatcgattttaatgcgtcagtcccggttatcagtctg
aatgaggatggaacccccgaaagcatagaaccgtccaggcggcttgatgcacaccgcctg
gttgaggaatgcatgctcacggcaaaccgcactgttgcccggcatatcgagaaaatcggt
tccctcccctttgtataccggatccatcagcgtcccgaagcggaggacgcccggacattt
ctcaatcttctcaaagcccagggaatcaattaccggatcccggaagatgaactggagagc
gaagactatagaaagcttctttcaattattgaaaacctggagttcaaggacctgattgaa
aaggttgcactgagatccatgaccaaggcggtatacagcgtggagaatcagggccatttc
ggtctggcatttgacgcatacacccacttcacctccccgattcgcagataccccgacctg
ctggtgcaccgtctgttgaaggaatacggccgcaccggcatcagcctttcggaagcagaa
gccaagaagcggaaaaacgagctgcaaaggctctgcaatcacgcctctgaggcggaaagc
acggccacagatgtggaacgggaatacatcaggatcaagtccatgcagtttctcaaagac
catctcggtgaagatcatgaaggaatcatcaccggggttacatcattcggactcttcgtt
cagctgaaggattttatgattgacggactggtgcatatatctgatatgaaggatgaccat
tacattttcgatggagaaaattatcagctgaaaggtgaaaaacggaaagccgttctccgg
ctgggggatccggtgaaggttcggatcaaccgggtttcggtggaagaacaaaaggcggat
ttccgcctcattgaacacccggcctga
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