Salinispira pacifica: L21SP2_0899
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Entry
L21SP2_0899 CDS
T03013
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
slr
Salinispira pacifica
Pathway
slr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L21SP2_0899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slr03021
]
L21SP2_0899
03400 DNA repair and recombination proteins [BR:
slr03400
]
L21SP2_0899
Enzymes [BR:
slr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L21SP2_0899
Transcription machinery [BR:
slr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L21SP2_0899
DNA repair and recombination proteins [BR:
slr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L21SP2_0899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_A_bac
HHH_5
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
AHC14319
UniProt:
V5WFH8
LinkDB
All DBs
Position
949200..950258
Genome browser
AA seq
352 aa
AA seq
DB search
MARKNLLKGFKKPKGITFEHSEVTPDYGRFIAYPFERGYGTTIGNTLRRILLSSIQGYAI
SAIRITSYDAEGNAHVLSSEYESIPEVVEDTSDLISSLKQLQIKLPEDTEQKNILVEVKG
EGEITGASLEVDSEIEVINNDLHLLTCMPNAHLEIEVQIDLGRGYVPAELNENYIEIIGT
IPMDAIFSPIKRVVFKTENTRVGNRADYDKLTLEIWTDGTIKPDDALAEAAKIAKDHFTI
FINFDENDILAEEDVDEENARIQAILETPVEELELSVRSSNCLKNANIKSIGDLTSKTED
EIAKTRNFGKKSLQEIKEKLKEWNLSLGMTDYSSLRGTTRVPENKEDVNDEA
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtaaaaacctgttaaaaggttttaaaaaaccaaagggaattaccttcgagcac
agtgaagttactccggattacggtcgttttattgcgtatccttttgaacggggatacggt
acaaccatcggaaataccctgaggcggatactgttgtccagcatacagggctatgctatc
agcgcgatcaggattacctcctacgatgctgaaggcaatgctcacgtgctgtccagtgaa
tatgaatcaattcccgaggttgttgaagatacatcagatctcatcagcagcctcaaacag
cttcagattaaactccccgaagacactgaacagaaaaatattcttgttgaagtgaaaggc
gagggagagattaccggagccagtctcgaagttgattctgagatcgaagtaatcaacaat
gatcttcatcttcttacgtgcatgccgaatgcacatttggagatagaggttcaaatagat
ctcggccggggatatgttccagccgagctgaatgaaaactatatcgagataatcggaacc
attcccatggatgcaattttctcgccgattaagcgggttgtgttcaagacagagaatacc
cgtgtagggaaccgggccgattatgataagctgactcttgaaatatggaccgacggaact
atcaagcctgacgatgctctggctgaagcggcgaagattgccaaggaccattttaccata
tttatcaacttcgacgagaacgatattcttgccgaagaagatgtggatgaagagaacgcc
cgcattcaggcaatactcgagacacccgtggaagaactggaactctcggttcggtccagc
aattgtctcaagaatgcgaacatcaaatccataggtgatctcacctcaaaaactgaagat
gaaattgcaaaaacacggaacttcgggaagaagtcgctccaggagatcaaggaaaaactc
aaagagtggaacctgagcctcggaatgacggattacagttctcttcggggaaccacccgg
gtaccggaaaataaggaagatgtaaacgatgaagcatag
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