Salinispira pacifica: L21SP2_1335
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Entry
L21SP2_1335 CDS
T03013
Name
(GenBank) Hydrolase (HAD superfamily)
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
slr
Salinispira pacifica
Pathway
slr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L21SP2_1335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slr03019
]
L21SP2_1335
Messenger RNA biogenesis [BR:
slr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L21SP2_1335
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
KH_1
RNase_Y_N
HDOD
KH_KhpA-B
KH_2
Cas3_HD
KH-I_KHDC4-BBP
dUTPase
Motif
Other DBs
NCBI-ProteinID:
AHC14734
UniProt:
V5WGQ3
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All DBs
Position
1407085..1408176
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AA seq
363 aa
AA seq
DB search
MIISSLEDEARHDAQALIHKIEQEGQITAERKGREILISTIQRMASEVNAEVTVASVNLP
NDEMKGRIIGREGRNIRTLETLTGVDIIIDDTPEAVVVSCFDPVRKEIARRSLERLISDG
RIHPTRIEEVVQKVTQEISQYIFEEGEKVLFDLGIHHMKPEGIRGIGRLVFRTSYGQNVL
AHSKEVAVFAGMIAAEVGADTEIARRAGLLHDVGKGIESDGDSNHVELGVELAKRTGEDE
RVINAIASHHGDVPHSCVESVIVQIADALSASRPGARRETLDNYIKRLENLEKIAEDFDG
VDKAYAIQAGRELRIMVDHEKVSDNEAREIAREIAKRIEAELRYPGRIKVTMIRETRIVE
YAR
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgattatctcatcactggaggatgaagcccggcacgacgcccaggctctcatccataag
atcgaacaggaaggtcagatcacagctgagcgtaagggacgggagatactcatctccaca
atccagcgcatggccagtgaggtgaatgcggaagtaaccgtcgcatcagtgaatcttccc
aacgatgaaatgaagggccgcattatcggcagggaagggcgaaacatcagaaccctggaa
accctgaccggagtggatatcattatcgatgatactcccgaagcggtggttgtttcatgt
ttcgatcctgtgcggaaagagatcgcccggcggagccttgaacggctcatcagcgacgga
cgaatccatcccaccaggattgaagaagtggttcagaaggtaacccaggagatcagtcag
tacatctttgaagaaggtgaaaaggttctgtttgatctgggcatccatcatatgaaaccc
gaaggtatccggggaatcgggcggctggtgttcagaaccagttacggacagaatgtgctg
gcccattccaaggaagtggccgtgtttgcaggcatgatcgccgctgaagtgggtgcggat
actgaaattgcacggagagcaggtttgctccacgacgtgggcaaaggaatcgagtctgac
ggtgattccaaccatgttgaactgggtgttgagcttgccaagcgcaccggtgaggatgag
cgggtcattaacgccatcgcatcccaccacggagatgtacctcacagctgcgtagagtcg
gtgattgtacagattgcggatgcgctgagcgcttcccgccccggtgcacgccgggagacg
ctggataactatattaagcgtcttgagaatcttgaaaagattgccgaggattttgacggc
gtggataaggcatatgccatccaggccggccgggaattgcggatcatggttgaccatgaa
aaggtcagcgataatgaggcccgggaaattgcccgtgaaattgccaaacggattgaagct
gaacttcgctatccggggcggatcaaggtaacaatgattcgtgaaacccgaattgtggag
tacgcacgctga
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