Salinispira pacifica: L21SP2_1771
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Entry
L21SP2_1771 CDS
T03013
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
slr
Salinispira pacifica
Pathway
slr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
slr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
L21SP2_1771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slr03021
]
L21SP2_1771
Transcription machinery [BR:
slr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L21SP2_1771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r4_2
Hormone_1
DUF6447
DUF1180
Motif
Other DBs
NCBI-ProteinID:
AHC15148
UniProt:
V5WH76
LinkDB
All DBs
Position
1879997..1881847
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AA seq
616 aa
AA seq
DB search
MTELQNDPAIKKLLDYAKNKKTISYDEVNDLLPEELVNSEKIEDVMVILSQNDIRLSEEV
QAQNEDIEADPPGQPGITRKKAGDSAQSKAQPASAAESGDAKGESADGKSGSEEPKKKVV
YNDKDSAIDDPIRLYLREIGKENLLTAEQEVELSKKMEDGENIIKGVISGSGMMIPEFFN
LAARAFSKKDPREMSMSKKEISEYLAERRRLSQFYREPLKLVVADLKSYIELKKKLISKG
EDIISHPKLAQKRDSLVGRLSDINLHQDEILQFSEKFVSTAKKIKSYQKEITRNEKRLRV
KNSRELRSLGRKLTILEDRELIEDELGLSSDEIKEMIREIQMTEKKIRSYELEFENPIDQ
ILDMAGEIERGKIMMQNAKDRLIKANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVE
KFEYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVVRESRQLMQVLGRE
PSDEEIAERLGWTVSRVKSVKNVAREPISLETPIGEEEDSLLGDFIEDKDVENPAHQTAF
TLLQEQLGDVLETLPEREQEVLKMRFGLEDGYSLTLEEVGLYFNVTRERIRQIEAKALRR
LRHPKRSRRLKDYLDN
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgacagaactgcagaatgatcctgcaataaagaaactacttgattacgcgaaaaacaag
aaaactatctcatatgacgaggtgaacgatctactccccgaggaactcgttaattcagag
aaaatcgaagatgtcatggtgatcctcagtcagaatgatatacggctgtcggaagaagtt
caggcgcaaaatgaagatatcgaagccgacccgccgggtcagcctggtatcacgcgaaaa
aaagcaggggattccgcccagtcaaaagcccagcccgccagtgccgctgaatccggagat
gcaaaaggggagtcggcagatggaaagagcggatctgaagaacccaaaaagaaagtagtc
tataacgataaagacagcgctattgatgatcccatacgcctgtatctccgggaaatcgga
aaagaaaatctgctcaccgccgaacaggaagttgaactttccaaaaagatggaagacggc
gagaacatcattaaaggtgtgatcagcggctccggaatgatgatcccggaatttttcaac
ctggctgccagggcattcagtaaaaaagatccccgtgaaatgagcatgagcaagaaagag
atttctgagtatcttgcggagcgccgaaggctgagccagttttaccgtgaacccctgaag
ctggtggttgcggacctgaaatcctatattgagttgaaaaagaagctgatctccaaaggg
gaggatatcatttcccatcctaaattggcgcagaaacgggacagcctggttgggcgtctt
tcggatattaatctgcatcaggatgaaattctccagttttccgaaaaatttgtgagcact
gccaaaaaaataaaaagttatcagaaagagatcaccagaaacgaaaagcgtctgcgggtg
aaaaattcccgggaactgcgatctctgggccgtaaactcaccatacttgaagaccgtgaa
ctcattgaagacgaacttggattatcctcggatgaaatcaaagagatgatccgggaaatt
cagatgactgaaaagaaaatccgcagctatgagcttgagtttgaaaacccgatagatcag
atactcgacatggctggagaaattgagcgcggaaagatcatgatgcagaatgccaaggat
cgcctgatcaaagcgaacctgcggctggttgtcagcatcgccaagaaatacaccaaccgg
ggtcttcatttctttgacctggttcaggaaggaaatatcggtctgatcaaagctgttgag
aagtttgagtaccggaaggggtacaagttctcaacctatgccacgtggtggatccgtcag
gctattaccagaagcatttccgaccaggcacgaaccattcgggttccggtgcatatgatt
gaacagatcaacaaagttgtccgcgaatccaggcagctcatgcaggtgctgggaagagaa
cccagcgatgaagaaatcgccgaacgtctgggctggacagtcagcagggtcaaatcggtg
aaaaacgtggcacgggaacccatttctctggaaacccccataggtgaagaagaggacagt
ctccttggagattttattgaagacaaggatgttgaaaaccccgcgcaccagactgcgttc
actcttctgcaggaacaattgggggatgtccttgaaacgcttccggagcgggagcaggaa
gtgctgaaaatgcgtttcggcctggaggacggctacagtctgactctggaagaagtagga
ctctatttcaatgtcaccagggaacgaatcagacagattgaagcaaaagcactcaggcgt
ctgcgccatcccaagcggagccgtcgattgaaagactatttggataattaa
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