Salinispira pacifica: L21SP2_2257
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Entry
L21SP2_2257 CDS
T03013
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
slr
Salinispira pacifica
Pathway
slr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L21SP2_2257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slr03019
]
L21SP2_2257
03400 DNA repair and recombination proteins [BR:
slr03400
]
L21SP2_2257
Enzymes [BR:
slr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L21SP2_2257
Messenger RNA biogenesis [BR:
slr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L21SP2_2257
DNA repair and recombination proteins [BR:
slr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L21SP2_2257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
TniB
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
AHC15618
UniProt:
V5WIL1
LinkDB
All DBs
Position
2423380..2424771
Genome browser
AA seq
463 aa
AA seq
DB search
MYVREEAQGLKERIFSSICRNWGLDYLYPHQKLCIDYLLAGTGYFGEAGMAETRNGILVS
LPTGSGKSLCFMAPAARIDGVTLILYPLNALLRDQQARFRRAGVPAELYYGGMTTEERSA
SLEKIGKMQKGVIISNCESAFSPGMLQALETVSIRLLVVDEGHLILQWGTSFRPSLFHLI
QLKRHLENPLTAVFTATISPDDRHILGTLLWSSADWDYVEMLSDRPNIRYRVVPCLHAPT
ALRLFLRQRFDPSWGFLAEQQNAADELNLPMLVFGKTRKICEDLARKTEIWLNIWGIHNI
SCGYYHAGLDRDTRKQIENDFAAERRGILFTTKAFGTGVDIPGIRCCVHLSPPENMEDFL
QESGRAGRDGNAACSLLFQETGMDFFPAGGCRRRHALSSLGQEIEHCSGCDHCEGNVILE
FPEGVAVRAFRDHYRLRLGRDVEKRILSREDFADFPEKLFSSI
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtgagggaagaggcgcaggggctgaaagaacggatattctcatcaatttgccgc
aactgggggcttgattacctctatccccatcagaagctgtgcatcgactatcttttggcg
ggaaccggttacttcggcgaggcaggaatggcagaaacccgaaacggtattctggtgagc
ctgcccaccggaagcggaaagagcctgtgcttcatggccccagccgcccgaattgacgga
gttacattgatattataccctctgaatgcactgctcagggatcagcaggccagattccgg
cgggccggtgtacctgcggagctctactacgggggaatgaccactgaggaacgaagcgct
tcattagagaagatcgggaagatgcaaaaaggggtgatcatcagcaactgcgagagcgct
ttcagccccggaatgcttcaggccctggagactgtcagcatccgccttctggtggtggat
gagggacatctgattcttcaatggggcacaagcttccgcccgtccctgttccatctcatt
cagctcaagcgtcacctggaaaaccctctcaccgccgtgttcactgcaacaatcagtcct
gatgacagacacattctgggcacacttctctggagttcggctgactgggattatgtggag
atgctcagcgacagacccaacatcaggtatcgggtagttccctgcctacacgcccccact
gcgctgcgcctgttcctgcgtcaacgtttcgacccgtcctggggttttctcgctgagcag
cagaatgctgccgacgaactgaacctgcccatgctggttttcggaaaaacccggaagatt
tgtgaagacctggcccgcaagacggaaatctggctgaacatctggggaattcacaacatc
agctgcggctactatcatgccggtctggatagggatacgagaaaacagatagaaaacgat
tttgctgcagagaggcggggaatcctgttcaccaccaaagcattcggcacgggggttgat
attcccggtatccgatgctgcgtgcatctcagcccgccggaaaacatggaggatttcctg
caggaaagcgggagagccggcagggacgggaacgcggcctgctccctccttttccaggag
accggcatggacttttttccggcaggcggatgccggcgccgccatgcactgagctctctg
ggtcaggagattgaacactgcagcggatgtgatcattgcgaaggaaacgtcattctggaa
ttccctgagggggttgcagtccgggcctttcgggatcattaccggttaagactgggccgt
gatgttgagaagcggattctttcccgggaggattttgccgatttcccggaaaaactgttc
agctccatttga
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