Salinispira pacifica: L21SP2_2703
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Entry
L21SP2_2703 CDS
T03013
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
slr
Salinispira pacifica
Pathway
slr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L21SP2_2703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slr03021
]
L21SP2_2703
03400 DNA repair and recombination proteins [BR:
slr03400
]
L21SP2_2703
Enzymes [BR:
slr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L21SP2_2703
Transcription machinery [BR:
slr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L21SP2_2703
DNA repair and recombination proteins [BR:
slr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L21SP2_2703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
RnfC_N
Cupin_3
ParM_N
Motif
Other DBs
NCBI-ProteinID:
AHC16055
UniProt:
V5WKA0
LinkDB
All DBs
Position
complement(2917656..2921900)
Genome browser
AA seq
1414 aa
AA seq
DB search
MREIQDFDNIMIKLASPDQVRAWSYGEVKKPETINYRTLRPEKDGLFCERIFGTTKEWEC
YCGKFKSIRYKGVICDRCGVEVTHPKVRRERMGHIELASPVSHIWYYRSVPSRMGLLLDL
TVAALRSILYYEKYIVIDPGDTDLKQMDLLTEEEYAEAKERYGMSFSAGIGAEAIRSLLE
TIDLDGLSAELRAKMIEKGEKADKRLLKRIEIVENFRDSKNQASWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLMNLNAPDIIIRNEKRMLQEAVDALFDNSK
KKRVVKGASNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLQLHQCGLPTK
MALELYKPFIMKKLVEKDVVYNIKRAKTLVEQETPEVWAVLDEVVKEHPVLLNRAPTLHR
LGIQAFEPVLVDSKAIKLHPLVCHAYNADFDGDQMAVHVPLTQAAQIECWTLMLSARNLL
DPANGKPIVFPSQDMVLGINYLTRHKEAGRGHGKRYSSFDEVIYAIENRDVDYQALIKVP
VDKAPHNGELVETTPGRMILNDALPNEIEFANYAMGDKELRSLIAKVYSKHGPYLTVLML
DQVKNLGFRYATIFGATIGVNDIIIPSRKPEMIEQANSDVIAIQNQYLQGHITNEERYNR
VVEVWSKTNEELTNEMMQKLQNDREGFNPVYMMANSGARGSRSQIRQLAGMRGLMAKPNG
EIIELPIRSNFKEGLSIIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVNEE
DCGTINGIDYTALKDGEEIVETLQERIVGRFTIERVKHPISGEILVDVNEEISEETAEAI
EEAGIESVRIRTVLTCESKHGVCRKCYGRNLATNRTVEIGEAVGIIAAQSIGQPGTQLTM
RTFHIGGAATKTSEENRTFLHYPVMINSIHGNTVTLKNGDRLFTRKGFLMASKVLEVLDT
SGKVKILVEDGDKIVKGQDVIQKGKEVIQAQENAYAVIREDKLYLIAQEQKIEIRNGADL
LVKVGDIVPADESIATFDPFSEPILAEHDGTVFYEDIDKTTLKEEVNEDTGNIEKKIAEL
TTESLQPRIIIKNDQEEELATYYLPGGSYVNVADGEKVEAGRALAKILQESAKTRDITGG
LPRVGELFEARKPKIPAVLAKVSGTVQFEGIVKSKRVIMVEDNFGQRQKHLVPMGRHLLV
REGDLVEAGEPICDGAVDPHDILQILGENALQRFLVNEVQEVYRLQGVDINDKHIGVIIR
QMMRKVEIIKVGDTNFIFGQQVDKYKFGEENRKVEKEGGQPAVARPLLLGITRASLNIDS
FISAASFQETTRVLTNAAIAGSVDGLRGLKENVIIGHLIPAGTGMRQYNNLKLYDENRSD
LDAHVQQIVEMREKEKAAVAATEGAGDTASGGDE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
gtgcgagaaatacaagatttcgacaatattatgattaagctcgccagcccggatcaggtc
cgggcctggagctatggtgaagtaaagaaaccagaaaccatcaactaccggaccctccgg
cctgaaaaggacggtctcttctgtgagcggattttcggaaccaccaaggaatgggaatgc
tactgcggaaagttcaagagcatccggtacaagggtgttatctgtgaccgctgcggagtt
gaagtaacccatcccaaggtccgccgtgagcggatggggcatatcgagctggcaagcccg
gtgagccatatctggtattaccggtccgtacccagccgcatgggtctgcttctggacctg
acggttgccgctctgcgttccattctctattacgagaagtacatagtaattgatcccggt
gatacagacctgaagcagatggatctgctcaccgaggaagaatacgccgaagccaaagaa
cgctacggtatgagtttctccgccggtatcggtgcggaagccatccggagtctccttgaa
accatcgacctggacggactcagcgcagagcttcgtgccaagatgattgaaaagggtgaa
aaagcggataagcgtctgctgaagcggattgaaattgtagaaaatttccgtgattccaag
aatcaggcaagctggatgattctggatgtgattcccgtaattcccccggaactgcgcccc
atggttcagctggacggcggccgttttgccacatccgacctgaacgacctctaccgccgg
gttatcaacagaaacaaccggctgaaacggctgatgaacctgaacgccccggatatcatt
atccggaacgagaagcggatgctccaggaagcggtggatgccctcttcgataacagcaag
aaaaaacgggtggtgaagggcgcgtcaaaccggcccctgaagtcgctttctgatatgctc
aagggtaagcagggacgtttccgccagaaccttctgggtaagcgtgtggactactccgga
cgatcggtaattgttgtaggtcccgacctgcagctccaccagtgcggactccccaccaaa
atggcacttgagctctacaagcccttcattatgaagaagcttgttgaaaaagatgtggta
tacaacattaaacgggcgaaaactctggttgaacaggaaacccccgaggtatgggcggtt
ctggatgaggttgttaaggaacatccggttcttctgaaccgtgcacccaccctccatcgt
ctgggtatccaggccttcgagccggttcttgtggattcaaaggcaatcaagctgcaccct
ctggtgtgtcatgcctacaacgccgactttgacggtgaccagatggcggtccatgtgccc
ctgacccaggcggcccagattgagtgctggacgctcatgctctccgccaggaatcttctg
gacccggcaaacggtaagcccattgtattcccctcacaggacatggttctgggaatcaac
tatcttacacggcataaagaagcggggaggggacacggaaaacgctactcttccttcgac
gaagtgatttatgcaattgaaaaccgtgacgttgactatcaggcgttgatcaaagtgccg
gtggacaaagctccccataacggcgagcttgtggaaaccactcccggccggatgattctc
aacgatgccctgcccaatgagattgagtttgccaactatgccatgggagacaaggagctt
cggtcccttattgccaaggtgtactccaaacacgggccgtatcttaccgtgcttatgctt
gatcaggtgaagaatctgggattccgctatgcaaccatcttcggtgcaaccatcggtgtg
aacgacattatcattcccagcaggaaacccgagatgatcgaacaggcgaacagcgatgtc
atcgccatccagaaccagtatctccagggacatatcaccaacgaagagcggtataaccgt
gtagttgaggtatggtccaagaccaatgaagagctcaccaatgagatgatgcagaagctg
cagaacgaccgggaaggtttcaacccggtatacatgatggccaactccggtgcccgtggt
agccgctcccagatccgtcagcttgcgggtatgcgtggtctgatggccaagcccaacggt
gaaatcatcgagctgcccatccggtccaactttaaagagggcctttcaatcatcgagttc
tttatctccaccaatggtgcccgtaagggtcttgccgacaccgctctgaagaccgccgat
gccggatatcttacccggcgtcttgtggatatcgcacaggatgtggtggtaaacgaagag
gactgcggaaccatcaacggtatcgattataccgccctgaaagacggtgaggaaattgtg
gaaacccttcaggaacgtatcgtaggccgttttaccatcgaacgggtgaagcatcccatc
agcggggagatcctggttgatgtaaacgaagaaatatcagaagaaactgcagaagccata
gaagaagcaggtatagaatcggtacggatccgtactgtgcttacctgtgaatcaaagcac
ggcgtctgccggaaatgctacggacggaacctcgcaaccaaccgtacggttgaaatcggt
gaagcggtgggaattattgccgcgcaaagtatcggacagcccggtacccagctcaccatg
cgtaccttccatatcgggggggccgcaaccaagaccagtgaggaaaaccggacctttctt
cattatccggtgatgatcaacagcattcacggtaataccgtaactctgaaaaacggagac
cggctgtttacccggaaagggttcctcatggccagcaaggtgctggaagttctggacacc
tccggcaaggtgaagatccttgtggaagacggggacaagattgtgaagggccaggatgta
atacagaagggcaaggaagttattcaggcccaggaaaacgcctatgcggttatccgtgaa
gataagctgtatctgatagcccaggagcagaagatcgaaatccggaacggtgcggatctt
ctggtgaaggtgggggatattgttcccgccgatgagtcgatcgccaccttcgacccgttc
tccgagcccattcttgcagagcacgacggtaccgtattttatgaggatatcgacaagacc
acgctgaaagaagaggtgaatgaagataccggtaacatcgagaagaaaattgccgaactc
accaccgagagtcttcagccccgaatcattattaaaaatgaccaggaagaagagcttgcc
acctattaccttcccggcggttcctatgtgaacgttgccgacggagagaaggttgaagca
ggccgcgccttggcgaaaatcctgcaggaatccgccaaaacccgggatattaccgggggt
ctgcccagggtcggtgaactgtttgaagctcgtaagcccaagatacccgcagtactggcc
aaagtgagcggtacggtacagtttgaagggatagtgaagtccaaacgggtgatcatggta
gaagacaacttcggtcagcgtcagaaacatctggttcccatgggtcggcatcttctggtc
cgggaaggcgacctggtggaggccggtgagcccatttgtgacggtgcggttgatccccac
gatattctccagattctcggagaaaatgcgctgcagcggttcctggtgaatgaagttcag
gaagtgtaccgtcttcagggtgtagatattaacgataagcacatcggggtaattatccgt
cagatgatgcgcaaggttgaaatcatcaaggtgggcgacaccaactttattttcggccag
caggtggacaagtacaagttcggtgaagaaaaccgcaaggttgagaaggaaggcggacag
cctgctgtggcacggcccctgcttctgggtattaccagagcgtcactgaacatcgacagc
ttcatttccgctgcttccttccaggaaaccacccgggtgctcaccaatgcggcaattgcc
ggctccgtggacggactcaggggcctgaaggaaaatgtgattatcggtcatctcattcct
gcgggtacaggtatgcgccagtataataatctgaagctctacgatgaaaaccgttcggat
cttgatgctcatgttcagcagattgttgaaatgagagagaaggaaaaggcggcggttgcg
gcgacagaaggcgccggagacacagcttcagggggcgacgagtag
DBGET
integrated database retrieval system
