Salinispira pacifica: L21SP2_2704
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Entry
L21SP2_2704 CDS
T03013
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
slr
Salinispira pacifica
Pathway
slr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L21SP2_2704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slr03021
]
L21SP2_2704
03400 DNA repair and recombination proteins [BR:
slr03400
]
L21SP2_2704
Enzymes [BR:
slr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L21SP2_2704
Transcription machinery [BR:
slr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L21SP2_2704
DNA repair and recombination proteins [BR:
slr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L21SP2_2704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AHC16056
UniProt:
V5WLV1
LinkDB
All DBs
Position
complement(2921912..2925409)
Genome browser
AA seq
1165 aa
AA seq
DB search
MFNRNTEIKRTEVGTSKGTVMELPNLVDIQLSSYEKFLQRDWMVQGNKPNLQGLEEVFQT
IFPIESQAGDMVLEYDHYTLDEENIKFNEAQCKAKGHTYAVPIKAKINLLFTETGEIRQK
DIYMGDIPIMTDRGTFIYNGAERVVVSQIHRSPGVIFSHEKGVYSSRIIPYRGSWLEFEI
DQKKELIFAKIDRKKRILGTLFLRALGYDTREKIIDLFYRLKTVTVEDTAESRDYLRGKV
LGRAVYIEDGEESKKLYKAGEKIHPHDVDELIHSQVSSIEIIDDENSESLHSDIILNCFE
REESKHTKEEGQDEPSHEAALSAVYAVIMPGEPITIESAEKDFNSMFFTSRRYDLGRVGR
YKLNKKFDYQDAPEEHILTKEDIVNTMGYLIRVYIGEANVDDIDHLGNRRVRSVGELLAN
QMKTAFSRMERIAKERMSLKEIETIKPQDLISIKPVVAAVKEFFGSSQLSQFMDQVNPLS
ELTHKRRLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLAGYTRVN
DYGFLETPYRKVKDGKVTQDIEYLSAMDEEKYFIAQANANINDKGAFVDEQVSVRKQGDY
TTRPPADVQYMDVSPKQVISVSSALIPFLEHDDANRALMGSNMQRQAVPLVSPEPPRVGT
GMEFKTAYDSGVLVKAKRGGVVSYVSNARVEITPEKPAFDGDKDVYELIKYQRTNQDTCY
VQKPMVAYKDKIVKGQAIADGPSTFKGEMALGRNILVGFVPWNGYNYEDAILISEKVVKN
DVFTSVHIKEFTIEVRETKLGPEKITRDIPNTSEKALDQLDEEGIVRIGAKVGSGYILVG
KVTPKSETETTPEFKLLNSIFGEKAKEVRDTSLRVPHGTEGTVIDVQRMRRSEGDDLSPG
VEEVVKVLIATKKKLQEGDKMAGRHGNKGIIARVLPEEDMPFMADGTPLELCLNPLGVPS
RMNIGQLLETMLGWAAVENDEWYTTPVFQSATGEEISGLLEKGGRPGSSQITLYDGRTGV
QFENDVMVGYMYVIKLHHMVTDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALE
AYGAANTLQELLTIKSDDMNGRAKIYESIVKGEPGTTAGVPESFNVLVQELRGLALDVSI
YDSKGKQIPLTERDEELINRQGSNF
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatcgaaataccgaaatcaaacgaaccgaggttggtacttccaagggaactgtc
atggaattgccgaatctcgtggatatccagctctcatcttatgagaaattcttacagcga
gactggatggtccaggggaacaagccgaatctacagggtctggaagaggtattccagacg
atttttcccatcgaaagccaggccggcgacatggtccttgagtatgaccattataccctg
gatgaggagaatatcaagtttaatgaggcacagtgcaaggccaaaggtcacacatacgca
gttcccatcaaggcgaaaataaatctgctgtttactgaaaccggggaaatccggcagaaa
gatatctatatgggcgacatccccatcatgactgaccggggaaccttcatctacaacggt
gcagagcgggtggttgtcagccagatccacaggagccccggggtgattttctcccacgag
aagggtgtgtatagttcacggatcatcccgtaccggggttcatggcttgaattcgaaatc
gatcagaaaaaagaactgattttcgccaagattgaccggaaaaagcgcattctcggtacc
ctgtttctccgggctctgggctacgacacacgggaaaagataatcgacctgttttaccgg
cttaaaaccgtaacggttgaagataccgccgagtcacgggattatctccggggcaaggtt
ctgggacgcgccgtatatattgaagacggcgaggaaagcaagaagctttacaaggccggt
gaaaaaatccacccccatgatgttgatgaattgatccactcccaggtgagcagcatagaa
atcatcgacgatgagaattccgaaagtcttcattctgatattattctcaactgcttcgag
cgggaagagagcaaacacaccaaggaagagggccaggatgaaccgtcccatgaagcagcc
ctttctgcggtatatgcagtgatcatgcccggcgaacccatcaccatagagagcgccgag
aaagatttcaattccatgtttttcacctcccggcgttacgacctgggaagggtgggacgc
tacaagctgaacaagaaattcgactaccaggatgctccggaagagcatattctcaccaag
gaagacatcgtaaacaccatgggatatctgatccgggtgtacatcggcgaagccaacgtg
gacgatatcgaccatcttggtaaccggcgtgtcagatcggtgggcgaactccttgccaac
cagatgaagaccgccttcagccggatggagcggatcgccaaggagcggatgagtctcaaa
gaaattgagaccatcaagccccaggatctgatctcaatcaaacccgttgttgctgcggtg
aaagagtttttcggttcatcccagctgtcacagtttatggaccaggtgaatcccctttcg
gaactcacccataagcggcgtctcaacgctctcggccccggtggtctcagccgtgaccgg
gcggggtttgaagtccgtgacgtacattacacccactacggccgaatgtgtcccattgag
acccctgaaggtccgaatatcggtctgattgtcagccttgcagggtacacccgggtgaac
gactacgggttccttgaaaccccgtaccggaaagtcaaagacggcaaggtaacccaggat
atcgaatatctttccgccatggatgaagagaaatacttcattgcccaggccaacgccaac
atcaatgacaaaggcgcctttgttgatgaacaggtttccgtgcggaaacagggtgattat
accacccgtccccccgcggatgttcagtacatggacgtttctcccaagcaggtaatctcc
gtatcatcggccctgattccctttctggagcatgacgacgccaaccgtgcattgatgggt
tcaaacatgcagcgccaggcggttccgctggtgagtcccgaacctccccgggttggaacg
ggaatggagttcaagacagcctatgactcgggtgttttggtgaaagcgaagcgcggcgga
gttgtaagctatgtgagcaatgcccgggttgagattaccccggagaagcccgcatttgac
ggcgacaaggacgtttacgagctgatcaaatatcagcggaccaaccaggacacctgctat
gtgcagaaacccatggttgcctacaaagacaagattgtgaaaggccaggccatcgccgac
ggtccctccacattcaagggtgaaatggcactgggacggaatattctggtggggtttgta
ccctggaacggatacaactacgaggacgccatccttatctccgaaaaagtggtgaagaac
gatgtattcacctcggttcatattaaagaattcaccatagaggtgcgggaaaccaagctg
gggcctgaaaagatcacccgggatattcccaacacatccgaaaaagccctggatcagctg
gacgaggaagggattgtccgcatcggcgccaaggtgggctccggttacatccttgtggga
aaagtaacccccaagagcgaaaccgagacaacccccgaattcaaactgctgaactccatc
ttcggcgagaaagccaaagaagtccgggatacctcccttcgggttccccacggaaccgaa
ggtaccgttatcgatgtgcagcggatgcggcgcagtgaaggtgatgacctctccccgggt
gttgaagaagtggtgaaggttcttatcgccaccaagaaaaaacttcaggaaggggacaag
atggccggccgtcacggtaacaagggtattatcgcccgggttcttcccgaggaagatatg
ccgttcatggccgacggtacgccgctggaattgtgtctcaaccctctgggggtaccatcc
cgtatgaacatcgggcagctgcttgaaaccatgcttggctgggcagccgttgaaaatgat
gagtggtacaccaccccggtattccagtccgcaaccggtgaggagatttccggtctcctg
gagaagggcggacgcccgggatcatcccagattaccctctatgacggacgaaccggtgtt
cagttcgaaaacgatgtcatggtgggttacatgtatgtgattaaactccatcatatggtt
acggacaaaatgcatgcacgttccaccggaccctacagtctggttacccagcagcccctg
ggcggtaaggctcagttcggcggacagcgtctgggtgaaatggaagtgtgggccctggaa
gcctacggtgcagccaatacgctgcaggagcttcttaccatcaaatccgacgatatgaac
ggaagggcaaagatttacgaaagcatagtgaagggcgaacccggcacaaccgccggcgtt
cccgaatccttcaacgtacttgttcaggagctgcggggtcttgccctggatgtttcgatt
tacgattcaaaaggtaagcagatccccctcactgaacgtgatgaagagctgattaaccgt
cagggaagcaatttctaa
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