Streptomyces lincolnensis: SLINC_0798
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Entry
SLINC_0798 CDS
T04801
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sls
Streptomyces lincolnensis
Pathway
sls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLINC_0798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sls03021
]
SLINC_0798
03019 Messenger RNA biogenesis [BR:
sls03019
]
SLINC_0798
Transcription machinery [BR:
sls03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SLINC_0798
Messenger RNA biogenesis [BR:
sls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SLINC_0798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
Spore_III_AA
DUF3086
NACHT
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
ANS63022
UniProt:
A0A1B1M3N4
LinkDB
All DBs
Position
961447..962589
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AA seq
380 aa
AA seq
DB search
MTTTLEHSSAQQQLPARVATGVLDIDAHGKGHLRGLDLLPSPTDLQVPAALVRRYDLRKG
DRVDGIRGTQRALTEVARINGRGPEEQRKRRHFRDLTPLHPRERLRLEHPASGLTGRVTD
LIAPVGKGQRGLIVAPPKTGKTVLLQQIAAAVAGNHPGARLMVLLVDERPEEVTDMRRSV
HGEVYASTFDRPAKQHIALAELVVERAQRLVEAGEDVVILLDSLTRLCRAHNNAAAAGGR
TLSGGVDASALIGPKRFFGAARLAEEGGSLTILATALVETGSRADDFFFEELKSTGNMEL
RLSRDLASRRVFPAVDIAPSGTRREELLLPPAELTTVSGLRRALQSRDGQSTTETLLERL
RATPDNATFLRRIQPTLPAG
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccactctcgaacactcttccgcccagcagcagcttccggcccgggtcgccacc
ggtgtcctcgacatcgacgcgcacgggaaggggcacctgcggggcctcgacctcctgccc
tcccccaccgacctccaggtcccggccgcgctcgtccgccggtacgacctgcgcaagggc
gaccgcgtcgacggcatacgcggcacccagcgggcgctgaccgaggtcgcccggatcaac
gggcgcggccccgaggagcagcgcaaacgccgtcacttccgtgacctgacaccgctgcac
ccgcgggagcggctgcggctcgaacacccggcgtccgggctgaccggacgcgtgaccgat
ctgatcgcacccgtcggcaagggccagcgcgggctgatcgtcgccccgcccaagaccggc
aagaccgtgctgctccagcagatcgcggccgccgtcgccggtaaccaccccggggcccgg
ctgatggtgctgctggtcgacgaacgccccgaggaggtcaccgacatgcgccgctccgtg
cacggcgaggtgtacgcctcgaccttcgaccggccggccaagcagcacatcgccctcgcc
gaactcgtcgtcgaacgggcccagcggctcgtcgaggcgggcgaggacgtcgtcatcctc
ctcgactccctgacccggctgtgcagggcccacaacaacgcggccgccgccggtggccgc
accctcagcggcggtgtcgacgcgagcgcgctgatcggccccaagcggttcttcggcgcc
gcccggctggccgaggagggcggctcgctcaccatcctcgccaccgcgctggtggagacc
ggctcccgtgccgacgacttcttcttcgaggagctcaagagcaccggcaacatggagctg
cgcctcagccgcgacctggcctcccgccgcgtcttcccggccgtcgacatcgccccctcc
ggcacccgccgcgaggaactgctgctccccccggccgagttgaccaccgtgagcggtctg
cgccgcgccctccagagccgggacgggcagagcaccaccgagacgctgctggagcggctg
cgcgcgactccggacaacgcgacgttcctgcgccggatccagccgacgctgcccgccggc
tga
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